Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0584.Seq
         (485 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    23   1.3  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    22   3.0  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   4.0  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 23.4 bits (48), Expect = 1.3
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = +2

Query: 245 NGQRPDRGQQGRPDFRQQGQFSGNQQEGAYRRVMNXRKNQESNDGPPNXRQNFNQ 409
           NG R +  +Q   + +   + +GN+Q G  +       N+++++     RQN NQ
Sbjct: 471 NGNRQNDNKQNG-NRQNDNKQNGNRQNGNKQNDNKQNGNRQNDNKRNGNRQNDNQ 524


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -1

Query: 161 TITKAFRT-IPSLLLIVELRWFVAINFVACLSLL 63
           TI+   RT +P +     L WF+ ++F  C++ L
Sbjct: 289 TISLDSRTDLPKVRYATALDWFLLMSFGYCIATL 322


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +2

Query: 245 NGQRPDRGQQGRPDFRQQGQFSGNQQE 325
           N Q+P + QQ +   +QQ Q    QQ+
Sbjct: 436 NAQQPQQQQQQQQQQQQQQQQQQQQQQ 462


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 110,290
Number of Sequences: 438
Number of extensions: 2095
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13297932
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)