Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0584.Seq
         (485 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g74870.1 68414.m08677 expressed protein contains similarity t...    31   0.31 
At2g43400.1 68415.m05394 electron transfer flavoprotein-ubiquino...    31   0.54 
At2g31650.1 68415.m03864 trithorax 1 (ATX-1) (TRX1) identical to...    27   5.1  
At1g02970.1 68414.m00267 protein kinase, putative similar to Wee...    27   5.1  
At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative severa...    27   8.9  
At1g02500.2 68414.m00201 S-adenosylmethionine synthetase 1 (SAM1...    27   8.9  
At1g02500.1 68414.m00200 S-adenosylmethionine synthetase 1 (SAM1...    27   8.9  

>At1g74870.1 68414.m08677 expressed protein contains similarity to
           hypothetical proteins
          Length = 289

 Score = 31.5 bits (68), Expect = 0.31
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
 Frame = +3

Query: 12  EEDLTIKNRILRVKRCTQQAQTGNKV----NRNKPSKFYNQQQTGDG 140
           EEDL I +   R+ +C Q+A  GN+     N NK  +  +++Q GDG
Sbjct: 163 EEDL-IPDTSQRMNKCKQEAAPGNQTTIHRNSNKKKRSNSEKQRGDG 208


>At2g43400.1 68415.m05394 electron transfer flavoprotein-ubiquinone
           oxidoreductase family protein contains Pfam profile:
           PF05187 Electron transfer flavoprotein-ubiquinone 
           oxidoreductase
          Length = 633

 Score = 30.7 bits (66), Expect = 0.54
 Identities = 13/50 (26%), Positives = 23/50 (46%)
 Frame = -3

Query: 282 GLPCCPRSGRCPFVYFQNQNVLVASHLACRFAPHPVCCPFDDYQSLSHHP 133
           G P  P++    F+Y  N   +    +      +P   P++++Q L HHP
Sbjct: 325 GWPLDPKTYGGSFLYHMNDRQVALGLVVALNYHNPFLNPYEEFQKLKHHP 374


>At2g31650.1 68415.m03864 trithorax 1 (ATX-1) (TRX1) identical to
           trithorax-like protein 1 GI:12659210 from [Arabidopsis
           thaliana]; characterized in Alvarez-Venegas R,et al,
           ATX-1, an Arabidopsis Homolog of Trithorax, Activates
           Flower Homeotic Genes.(Curr Biol. 2003 Apr
           15;13(8):627-37 PMID: 12699618); contains Pfam profiles
           PF00856: SET domain, PF00855: PWWP domain, PF00628,
           PHD-finger; identical to cDNA  trithorax-like protein 1
           (TRX1) GI:12659209
          Length = 1062

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 11/26 (42%), Positives = 17/26 (65%)
 Frame = +2

Query: 290 RQQGQFSGNQQEGAYRRVMNXRKNQE 367
           ++   FSGN+Q G+ RR  +  KNQ+
Sbjct: 156 KENNAFSGNKQNGSSRRKGSSSKNQD 181


>At1g02970.1 68414.m00267 protein kinase, putative similar to
           Wee1-like protein GI:5821717 from [Zea mays]
          Length = 500

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 27  IKNRILRVKRCTQQAQTGNKVNRNKPSKFYNQQQTGD 137
           +K   ++ KRC Q++ TGN  N    SK    +Q  D
Sbjct: 130 VKLNTVKSKRCRQESFTGNHSNSTWSSKHRVDEQEND 166


>At5g08110.1 68418.m00946 DEAD/DEAH box helicase, putative several
           putative ATP-dependent helicases
          Length = 1058

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 252 CPFVYFQNQNVLVASHLACRFAPHPVCCPFD 160
           C  +  QN++VL+  HLAC    HP+   +D
Sbjct: 706 CCHIDSQNKHVLM-QHLACAALEHPLSLQYD 735


>At1g02500.2 68414.m00201 S-adenosylmethionine synthetase 1 (SAM1)
           identical to S-adenosylmethionine synthetase 1
           (Methionine adenosyltransferase 1, AdoMet synthetase 1)
           [Arabidopsis thaliana] SWISS-PROT:P23686
          Length = 393

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +1

Query: 34  IEYYVSRDAHNKLRQATKLIATNHRSSTINSKLGMVRKALVI 159
           +EYY  + A   +R  T LI+T H  +  N ++    K  VI
Sbjct: 174 VEYYNDKGAMVPIRVHTVLISTQHDETVTNDEIARDLKEHVI 215


>At1g02500.1 68414.m00200 S-adenosylmethionine synthetase 1 (SAM1)
           identical to S-adenosylmethionine synthetase 1
           (Methionine adenosyltransferase 1, AdoMet synthetase 1)
           [Arabidopsis thaliana] SWISS-PROT:P23686
          Length = 393

 Score = 26.6 bits (56), Expect = 8.9
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = +1

Query: 34  IEYYVSRDAHNKLRQATKLIATNHRSSTINSKLGMVRKALVI 159
           +EYY  + A   +R  T LI+T H  +  N ++    K  VI
Sbjct: 174 VEYYNDKGAMVPIRVHTVLISTQHDETVTNDEIARDLKEHVI 215


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,925,581
Number of Sequences: 28952
Number of extensions: 161839
Number of successful extensions: 454
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 442
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 838967680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)