Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0581.Seq
         (489 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6C906 Cluster: Similarities with tr|Q9UUD1 Schizosacch...    34   1.5  
UniRef50_A2ZQ50 Cluster: Putative uncharacterized protein; n=3; ...    32   7.9  

>UniRef50_Q6C906 Cluster: Similarities with tr|Q9UUD1
           Schizosaccharomyces pombe Putative DNA- binding protein;
           n=1; Yarrowia lipolytica|Rep: Similarities with
           tr|Q9UUD1 Schizosaccharomyces pombe Putative DNA-
           binding protein - Yarrowia lipolytica (Candida
           lipolytica)
          Length = 854

 Score = 34.3 bits (75), Expect = 1.5
 Identities = 19/59 (32%), Positives = 32/59 (54%)
 Frame = +3

Query: 57  DFLTNTLLSTGRKLGELFDIMPPIPVKNEDIVIEEVSDHETRNTTEVRSFVVNGTANNF 233
           + + + L+    +LGE+  +MPP+PV++ D V E V + E    TE    VV  + + F
Sbjct: 647 NLVKDALVMVKAELGEI--VMPPMPVESIDTVEEAVEEEEPGEETEDDEAVVEDSESEF 703


>UniRef50_A2ZQ50 Cluster: Putative uncharacterized protein; n=3;
           Oryza sativa|Rep: Putative uncharacterized protein -
           Oryza sativa subsp. japonica (Rice)
          Length = 387

 Score = 31.9 bits (69), Expect = 7.9
 Identities = 12/42 (28%), Positives = 25/42 (59%)
 Frame = +3

Query: 60  FLTNTLLSTGRKLGELFDIMPPIPVKNEDIVIEEVSDHETRN 185
           F+  T  S  ++   LFD++P +P+    +V+E++  H T++
Sbjct: 175 FIRQTNSSRRKRRSSLFDMVPEMPMDESPVVVEQLMLHSTQD 216


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 335,929,471
Number of Sequences: 1657284
Number of extensions: 5238580
Number of successful extensions: 11336
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 11099
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11334
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 28019067077
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)