Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0581.Seq
         (489 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0626 - 4713943-4714515,4714645-4714853,4717310-4717628           32   0.28 
07_03_1447 + 26587436-26587497,26588479-26589130,26589247-265893...    30   1.1  
02_01_0305 + 2041370-2043114,2043764-2044121                           30   1.1  
11_04_0428 + 17628695-17628773,17628789-17629009                       28   4.6  
07_03_0918 - 22581625-22581687,22581773-22581868,22581980-225822...    27   8.1  

>01_01_0626 - 4713943-4714515,4714645-4714853,4717310-4717628
          Length = 366

 Score = 31.9 bits (69), Expect = 0.28
 Identities = 12/42 (28%), Positives = 25/42 (59%)
 Frame = +3

Query: 60  FLTNTLLSTGRKLGELFDIMPPIPVKNEDIVIEEVSDHETRN 185
           F+  T  S  ++   LFD++P +P+    +V+E++  H T++
Sbjct: 154 FIRQTNSSRRKRRSSLFDMVPEMPMDESPVVVEQLMLHSTQD 195


>07_03_1447 +
           26587436-26587497,26588479-26589130,26589247-26589335,
           26589794-26589858,26589967-26590022,26590107-26590227,
           26590316-26590390,26590689-26590742,26590830-26590924,
           26591004-26591178,26591293-26591537
          Length = 562

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = +3

Query: 45  DLTEDFLTNTLLSTGRKLGELF---DIMPPIPVKNEDIVIEEVSDHETRNTTE 194
           D+   +L  T    G KLG  +   +I+PP+PV     ++E ++D  + N  E
Sbjct: 360 DVFNSYLEKTPPLNGGKLGFYYKDHEILPPLPVGFHRYIVENLNDVTSNNLVE 412


>02_01_0305 + 2041370-2043114,2043764-2044121
          Length = 700

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = -2

Query: 245 IVYLKVISGAVDNKTPDFGRVSGLVVGYLLNDDVFVFDGY 126
           ++ L V    + N  PDFG+  GL+ G +  DD F+   +
Sbjct: 534 LIMLSVGQNGLSNIPPDFGKYLGLLKGLVKPDDEFLITNH 573


>11_04_0428 + 17628695-17628773,17628789-17629009
          Length = 99

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 16/31 (51%), Positives = 20/31 (64%)
 Frame = -2

Query: 233 KVISGAVDNKTPDFGRVSGLVVGYLLNDDVF 141
           KVIS A +NKTP  G++  LVV   L D +F
Sbjct: 66  KVIS-ACENKTPTLGKMLFLVVFIDLRDKIF 95


>07_03_0918 - 22581625-22581687,22581773-22581868,22581980-22582268,
            22582341-22582477,22582567-22582683,22583277-22583440,
            22583542-22583756,22583838-22584004,22584206-22584559,
            22584647-22584795,22584907-22585030,22585132-22585371,
            22585723-22586140,22586297-22586920,22586999-22587183,
            22587302-22587412,22587583-22587789,22587869-22587967,
            22588063-22588159,22588296-22588384,22588495-22588548,
            22588671-22588793,22588872-22588940,22589020-22589089,
            22589202-22589260,22589367-22589570,22590032-22590060,
            22590375-22590433,22590513-22590634,22591637-22591830,
            22591974-22592088
          Length = 1680

 Score = 27.1 bits (57), Expect = 8.1
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
 Frame = +3

Query: 33   KIKPDLTEDFLTNTLLSTGRKLGELFDIMPPIPVKNEDI-VIEEVSDHETRNTTEVRS 203
            +I  ++ ++ L  +L  T +  G   DI+PP PVK  D    ++  D E      VRS
Sbjct: 1415 RIMGNMMDNLLVRSL--TSKSKGRTDDIVPPSPVKAPDADGADKTDDEENPMMETVRS 1470


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,523,772
Number of Sequences: 37544
Number of extensions: 129009
Number of successful extensions: 235
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 233
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 235
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)