Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0581.Seq
         (489 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17788| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.3  
SB_10576| Best HMM Match : La (HMM E-Value=6.9e-28)                    27   6.3  

>SB_17788| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 293

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -2

Query: 245 IVYLKVISGAVDNKTPDFGRVSGLVVGYLLNDDVFVFD 132
           +VYL+++   VDNKT D   +      ++ N  +F FD
Sbjct: 93  VVYLELVENQVDNKTGDGNNIRKRADRFIWN-QIFDFD 129


>SB_10576| Best HMM Match : La (HMM E-Value=6.9e-28)
          Length = 711

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +3

Query: 9   YGSYKIEAKIKPDLTEDFLTNTL 77
           Y SY +E K +P+L +DF+  T+
Sbjct: 616 YYSYGLEKKFRPELFKDFMDETI 638


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,505,428
Number of Sequences: 59808
Number of extensions: 180136
Number of successful extensions: 388
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 388
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)