Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0581.Seq
         (489 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcript...    25   1.4  
AF000953-1|AAB96576.1|  433|Anopheles gambiae carboxypeptidase A...    25   1.8  
AY536865-1|AAT07965.1|  650|Anopheles gambiae tryptophan transpo...    24   3.2  
AJ626713-1|CAF25029.1|  650|Anopheles gambiae tryptophan transpo...    24   3.2  

>AB090815-2|BAC57906.1|  973|Anopheles gambiae reverse transcriptase
           protein.
          Length = 973

 Score = 25.0 bits (52), Expect = 1.4
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = -2

Query: 131 GYRRHNVEQFS*FPSRGQQCVRQEILSE-IRF-DF 33
           G + H V Q S FP+   QC  +E+  E +RF DF
Sbjct: 203 GSKCHRVAQGSGFPAWKTQCFNEELFIEALRFGDF 237


>AF000953-1|AAB96576.1|  433|Anopheles gambiae carboxypeptidase A
           protein.
          Length = 433

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 6/45 (13%)
 Frame = +3

Query: 3   ENYGSYKI----EAKIKPDLTEDFLTNTL--LSTGRKLGELFDIM 119
           +NY  Y++    EA+++     +  +++L  L T RKLG+ FDI+
Sbjct: 35  DNYRLYRVTPHSEAQLRSVAAMEQASDSLIFLETARKLGDRFDIV 79


>AY536865-1|AAT07965.1|  650|Anopheles gambiae tryptophan
           transporter protein.
          Length = 650

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 111 RTILLISVPWTAVC 70
           R +L + VPWT +C
Sbjct: 249 RLVLCLLVPWTCIC 262


>AJ626713-1|CAF25029.1|  650|Anopheles gambiae tryptophan
           transporter protein.
          Length = 650

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 111 RTILLISVPWTAVC 70
           R +L + VPWT +C
Sbjct: 249 RLVLCLLVPWTCIC 262


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 363,164
Number of Sequences: 2352
Number of extensions: 5887
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 563,979
effective HSP length: 60
effective length of database: 422,859
effective search space used: 43131618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)