Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0581.Seq
         (489 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53150-7|ABB51189.1| 1375|Caenorhabditis elegans Twik family of ...    27   9.7  
U53150-6|ABB51187.1| 1544|Caenorhabditis elegans Twik family of ...    27   9.7  
U53150-5|ABB51188.1| 1720|Caenorhabditis elegans Twik family of ...    27   9.7  
L39927-1|AAA98784.1|  344|Caenorhabditis elegans cathepsin B-lik...    27   9.7  
L39896-1|AAA98786.1|  344|Caenorhabditis elegans cathepsin B-lik...    27   9.7  
AF016426-3|AAB65346.1|  344|Caenorhabditis elegans Cysteine prot...    27   9.7  

>U53150-7|ABB51189.1| 1375|Caenorhabditis elegans Twik family of
            potassium channelsprotein 11, isoform c protein.
          Length = 1375

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 19/57 (33%), Positives = 23/57 (40%)
 Frame = +3

Query: 39   KPDLTEDFLTNTLLSTGRKLGELFDIMPPIPVKNEDIVIEEVSDHETRNTTEVRSFV 209
            KP   E+ L       G K     D   P+ +KN D    EV   E   +TE  SFV
Sbjct: 1027 KPKFVEENLQTQNTHDGIKEQSAVDEEMPLFLKNSDCQTVEVISFECATSTENVSFV 1083


>U53150-6|ABB51187.1| 1544|Caenorhabditis elegans Twik family of
            potassium channelsprotein 11, isoform a protein.
          Length = 1544

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 19/57 (33%), Positives = 23/57 (40%)
 Frame = +3

Query: 39   KPDLTEDFLTNTLLSTGRKLGELFDIMPPIPVKNEDIVIEEVSDHETRNTTEVRSFV 209
            KP   E+ L       G K     D   P+ +KN D    EV   E   +TE  SFV
Sbjct: 1027 KPKFVEENLQTQNTHDGIKEQSAVDEEMPLFLKNSDCQTVEVISFECATSTENVSFV 1083


>U53150-5|ABB51188.1| 1720|Caenorhabditis elegans Twik family of
            potassium channelsprotein 11, isoform b protein.
          Length = 1720

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 19/57 (33%), Positives = 23/57 (40%)
 Frame = +3

Query: 39   KPDLTEDFLTNTLLSTGRKLGELFDIMPPIPVKNEDIVIEEVSDHETRNTTEVRSFV 209
            KP   E+ L       G K     D   P+ +KN D    EV   E   +TE  SFV
Sbjct: 1027 KPKFVEENLQTQNTHDGIKEQSAVDEEMPLFLKNSDCQTVEVISFECATSTENVSFV 1083


>L39927-1|AAA98784.1|  344|Caenorhabditis elegans cathepsin B-like
           cysteine proteinaseprotein.
          Length = 344

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +3

Query: 102 ELFDIMPPIPVKNEDIVIEEVSD 170
           +L D+   +P K+EDIV  EVSD
Sbjct: 58  KLMDVKYLVPHKDEDIVATEVSD 80


>L39896-1|AAA98786.1|  344|Caenorhabditis elegans cathepsin B-like
           cysteine proteinaseprotein.
          Length = 344

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +3

Query: 102 ELFDIMPPIPVKNEDIVIEEVSD 170
           +L D+   +P K+EDIV  EVSD
Sbjct: 58  KLMDVKYLVPHKDEDIVATEVSD 80


>AF016426-3|AAB65346.1|  344|Caenorhabditis elegans Cysteine
           protease related protein 5 protein.
          Length = 344

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = +3

Query: 102 ELFDIMPPIPVKNEDIVIEEVSD 170
           +L D+   +P K+EDIV  EVSD
Sbjct: 58  KLMDVKYLVPHKDEDIVATEVSD 80


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,074,247
Number of Sequences: 27780
Number of extensions: 133105
Number of successful extensions: 270
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 270
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 270
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)