Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0581.Seq
         (489 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g18220.1 68415.m02123 expressed protein contains Pfam domain ...    28   2.9  
At4g12210.1 68417.m01938 zinc finger (C3HC4-type RING finger) fa...    27   5.1  
At1g19860.1 68414.m02491 zinc finger (CCCH-type) family protein ...    27   6.8  
At3g24780.1 68416.m03110 hypothetical protein                          27   9.0  
At1g69440.1 68414.m07979 PAZ domain-containing protein / piwi do...    27   9.0  

>At2g18220.1 68415.m02123 expressed protein contains Pfam domain
           PF03715: Uncharacterised protein family (UPF0120)
          Length = 779

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 17/52 (32%), Positives = 31/52 (59%)
 Frame = +3

Query: 45  DLTEDFLTNTLLSTGRKLGELFDIMPPIPVKNEDIVIEEVSDHETRNTTEVR 200
           D+ EDF+    LS+  +  +LFDI      K+ED  ++E++D ET+ + + +
Sbjct: 713 DVVEDFV----LSSDEEEEDLFDIGGD---KDEDDAVDEIADPETKTSKKTK 757


>At4g12210.1 68417.m01938 zinc finger (C3HC4-type RING finger)
           family protein low similarity to RING-H2 finger protein
           RHG1a [Arabidopsis thaliana] GI:3822225; contains Pfam
           profile PF00097: Zinc finger, C3HC4 type (RING finger)
          Length = 203

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 9/26 (34%), Positives = 18/26 (69%)
 Frame = +3

Query: 114 IMPPIPVKNEDIVIEEVSDHETRNTT 191
           ++  I  K+E+I + + +DH+TR +T
Sbjct: 26  VIVEIDTKSEEIFVNQTTDHQTRRST 51


>At1g19860.1 68414.m02491 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 413

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 9/28 (32%), Positives = 20/28 (71%)
 Frame = +3

Query: 114 IMPPIPVKNEDIVIEEVSDHETRNTTEV 197
           ++P +PV+++DI ++  SD  T++  +V
Sbjct: 145 VIPILPVEDDDIAMDSASDFPTQSGVDV 172


>At3g24780.1 68416.m03110 hypothetical protein
          Length = 715

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +3

Query: 72  TLLSTGRK-LGELFDIMPPIPVKNEDIVIEEVSDHETRNTTEV 197
           T LS+G   L   F I+P  P K+ +  +EE  DH++  T ++
Sbjct: 119 TYLSSGNPCLDFFFHIVPSTPKKSLEQRLEEAWDHDSLTTLKL 161


>At1g69440.1 68414.m07979 PAZ domain-containing protein / piwi
           domain-containing protein similar to SP|Q9XGW1 PINHEAD
           protein (ZWILLE protein) {Arabidopsis thaliana};
           contains Pfam profiles PF02171: Piwi domain, PF02170:
           PAZ domain
          Length = 990

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 21/62 (33%), Positives = 32/62 (51%), Gaps = 4/62 (6%)
 Frame = -2

Query: 206 KTPDFGRVSGLVVGYLLNDDVFVFDGYRR---HNVEQFS*FPSRG-QQCVRQEILSEIRF 39
           K PDFG   G V+  L N  +  FD  +R   +NVE  S  PS+   + ++Q+++   R 
Sbjct: 152 KRPDFGGQDGSVIYLLANHFLVKFDSSQRIYHYNVE-ISPQPSKEIARMIKQKLVETDRN 210

Query: 38  DF 33
            F
Sbjct: 211 SF 212


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,333,090
Number of Sequences: 28952
Number of extensions: 114564
Number of successful extensions: 250
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 250
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 250
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 848837888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)