Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0580.Seq
(473 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_A7SGC3 Cluster: Predicted protein; n=5; Eumetazoa|Rep: ... 81 9e-15
UniRef50_Q9U762 Cluster: 40S ribosomal protein S6; n=10; Culicim... 81 1e-14
UniRef50_P62753 Cluster: 40S ribosomal protein S6; n=203; Eukary... 79 4e-14
UniRef50_Q9NE83 Cluster: 40S ribosomal protein S6; n=9; Trypanos... 69 5e-11
UniRef50_A5K858 Cluster: 40S ribosomal protein S6, putative; n=5... 58 1e-07
UniRef50_A0CU37 Cluster: Chromosome undetermined scaffold_28, wh... 53 3e-06
UniRef50_A4VD76 Cluster: Putative uncharacterized protein; n=1; ... 52 5e-06
UniRef50_UPI00005A146E Cluster: PREDICTED: similar to 40S riboso... 50 2e-05
UniRef50_O15598 Cluster: Ribosomal protein S6; n=6; Entamoeba hi... 48 8e-05
UniRef50_A0DEZ7 Cluster: Chromosome undetermined scaffold_48, wh... 46 4e-04
UniRef50_A2EFM7 Cluster: Ribosomal protein S6e, putative; n=2; T... 36 0.46
UniRef50_P29327-2 Cluster: Isoform B of P29327 ; n=3; Drosophila... 34 1.4
UniRef50_Q4V5Z5 Cluster: IP07914p; n=1; Drosophila melanogaster|... 34 1.4
UniRef50_Q7QSH4 Cluster: GLP_64_20707_19961; n=1; Giardia lambli... 34 1.8
UniRef50_UPI0000DAF6F6 Cluster: glucosamine fructose-6-phosphate... 33 2.4
UniRef50_A6L045 Cluster: Putative uncharacterized protein; n=1; ... 33 3.2
UniRef50_A2F5X7 Cluster: Putative uncharacterized protein; n=1; ... 33 3.2
UniRef50_A7EB45 Cluster: Predicted protein; n=1; Sclerotinia scl... 33 4.3
UniRef50_A6UN38 Cluster: Response regulator receiver protein; n=... 32 5.6
UniRef50_A4QU80 Cluster: Putative uncharacterized protein; n=1; ... 32 5.6
UniRef50_P43465 Cluster: Raffinose operon transcriptional regula... 32 5.6
UniRef50_Q98SA3 Cluster: 40S ribosomal protein S6; n=1; Guillard... 32 7.4
UniRef50_Q5CRF6 Cluster: DNAj domain protein; n=2; Cryptosporidi... 31 9.8
UniRef50_A5K0C8 Cluster: Putative uncharacterized protein; n=2; ... 31 9.8
>UniRef50_A7SGC3 Cluster: Predicted protein; n=5; Eumetazoa|Rep:
Predicted protein - Nematostella vectensis
Length = 245
Score = 81.4 bits (192), Expect = 9e-15
Identities = 38/56 (67%), Positives = 45/56 (80%)
Frame = -3
Query: 420 DGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKIR 253
D +PRRLGPKR KIRK+FNLSKEDDVR+YV++R LP KEGK K + KAPKI+
Sbjct: 126 DNTIPRRLGPKRVGKIRKMFNLSKEDDVRQYVIRRPLPEKEGK---KAKSKAPKIQ 178
Score = 43.6 bits (98), Expect = 0.002
Identities = 46/132 (34%), Positives = 61/132 (46%), Gaps = 8/132 (6%)
Frame = -2
Query: 472 LALVIVRKGAQEIPGLT*WKCTPPSRSQTCFQNP*AVQP*QRR*CTS--------LCRQT 317
L+LVIV+KG Q+IPGLT T P R P V ++ S + R+
Sbjct: 109 LSLVIVKKGEQDIPGLT--DNTIPRRL-----GPKRVGKIRKMFNLSKEDDVRQYVIRRP 161
Query: 316 RAPSQGRKRKC*TQT*GT*DPRLVTPVVLQXXXXXXXXXXXXXXXXKSSEAEYAKLLAQR 137
+G+K K RLVTPVVLQ K A+YAKLLA+R
Sbjct: 162 LPEKEGKKAKSKAPK----IQRLVTPVVLQRKRKRLALKRQRAQKCKQEAADYAKLLAKR 217
Query: 136 KKESKVRRQEEI 101
KE+K +R E++
Sbjct: 218 AKEAKEKRHEQL 229
>UniRef50_Q9U762 Cluster: 40S ribosomal protein S6; n=10;
Culicimorpha|Rep: 40S ribosomal protein S6 - Aedes
albopictus (Forest day mosquito)
Length = 349
Score = 81.0 bits (191), Expect = 1e-14
Identities = 41/56 (73%), Positives = 46/56 (82%)
Frame = -3
Query: 420 DGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKIR 253
D V RRLGPKRAS IRKL+NL+KEDDVR+YVVKR LP K+GK KPR KAPKI+
Sbjct: 126 DTTVLRRLGPKRASNIRKLYNLTKEDDVRQYVVKRPLPEKDGK---KPRTKAPKIQ 178
Score = 38.7 bits (86), Expect = 0.065
Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 3/127 (2%)
Frame = -2
Query: 472 LALVIVRKGAQEIPGLT*W---KCTPPSRSQTCFQNP*AVQP*QRR*CTSLCRQTRAPSQ 302
LAL++V+KG ++IPGLT + P R+ + + R + ++
Sbjct: 109 LALIVVKKGEKDIPGLTDTTVLRRLGPKRASNIRKLYNLTKEDDVR--QYVVKRPLPEKD 166
Query: 301 GRKRKC*TQT*GT*DPRLVTPVVLQXXXXXXXXXXXXXXXXKSSEAEYAKLLAQRKKESK 122
G+K + T RL+TPVVLQ K +EAEY K+L R+++ +
Sbjct: 167 GKKPR----TKAPKIQRLITPVVLQRKRHRLAIKKRRVESRKEAEAEYMKILHLRRRQER 222
Query: 121 VRRQEEI 101
+RR+ +
Sbjct: 223 IRRRSRL 229
>UniRef50_P62753 Cluster: 40S ribosomal protein S6; n=203;
Eukaryota|Rep: 40S ribosomal protein S6 - Homo sapiens
(Human)
Length = 249
Score = 79.4 bits (187), Expect = 4e-14
Identities = 42/56 (75%), Positives = 47/56 (83%)
Frame = -3
Query: 420 DGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKIR 253
D VPRRLGPKRAS+IRKLFNLSKEDDVR+YVV++ L KEGK KPR KAPKI+
Sbjct: 126 DTTVPRRLGPKRASRIRKLFNLSKEDDVRQYVVRKPL-NKEGK---KPRTKAPKIQ 177
Score = 44.4 bits (100), Expect = 0.001
Identities = 46/126 (36%), Positives = 58/126 (46%), Gaps = 2/126 (1%)
Frame = -2
Query: 472 LALVIVRKGAQEIPGLT*WKCTPPSRSQTCFQNP*AVQP*QRR*CTSLCRQ--TRAPSQG 299
L LVIV+KG ++IPGLT T P R + ++ RQ R P
Sbjct: 109 LNLVIVKKGEKDIPGLT--DTTVPRRLGP--KRASRIRKLFNLSKEDDVRQYVVRKPLNK 164
Query: 298 RKRKC*TQT*GT*DPRLVTPVVLQXXXXXXXXXXXXXXXXKSSEAEYAKLLAQRKKESKV 119
+K +T RLVTP VLQ K AEYAKLLA+R KE+K
Sbjct: 165 EGKK--PRTKAPKIQRLVTPRVLQHKRRRIALKKQRTKKNKEEAAEYAKLLAKRMKEAKE 222
Query: 118 RRQEEI 101
+RQE+I
Sbjct: 223 KRQEQI 228
>UniRef50_Q9NE83 Cluster: 40S ribosomal protein S6; n=9;
Trypanosomatidae|Rep: 40S ribosomal protein S6 -
Leishmania major
Length = 249
Score = 68.9 bits (161), Expect = 5e-11
Identities = 37/56 (66%), Positives = 43/56 (76%)
Frame = -3
Query: 420 DGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKIR 253
D PRRLGPKRASKIRKLFNLS+ +DVR+YVV+R + K GK K R KAPKI+
Sbjct: 129 DTTAPRRLGPKRASKIRKLFNLSRTEDVRKYVVRRRV-VKSGK---KDRLKAPKIQ 180
>UniRef50_A5K858 Cluster: 40S ribosomal protein S6, putative; n=5;
Plasmodium|Rep: 40S ribosomal protein S6, putative -
Plasmodium vivax
Length = 391
Score = 57.6 bits (133), Expect = 1e-07
Identities = 29/50 (58%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Frame = -3
Query: 420 DGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKEN-AKPR 274
D V ++LGPKRA+KIRKLFNL K DDVR+YV+ R + +K GK KP+
Sbjct: 167 DKAVGKKLGPKRATKIRKLFNLDKTDDVRKYVIGRAI-SKNGKNRFIKPK 215
>UniRef50_A0CU37 Cluster: Chromosome undetermined scaffold_28, whole
genome shotgun sequence; n=6; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_28,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 315
Score = 53.2 bits (122), Expect = 3e-06
Identities = 28/59 (47%), Positives = 39/59 (66%), Gaps = 3/59 (5%)
Frame = -3
Query: 420 DGNVPRRLGPKRASKIRKLFNLSKEDD---VRRYVVKRVLPAKEGKENAKPRHKAPKIR 253
D NVPRRLGPKR +K+R+LF K D V++ +++R K+GK+ R KAPKI+
Sbjct: 126 DQNVPRRLGPKRLTKLRRLFGFKKADGVAIVQKNLIRRTWTTKDGKK----RQKAPKIQ 180
>UniRef50_A4VD76 Cluster: Putative uncharacterized protein; n=1;
Tetrahymena thermophila SB210|Rep: Putative
uncharacterized protein - Tetrahymena thermophila SB210
Length = 293
Score = 52.4 bits (120), Expect = 5e-06
Identities = 30/77 (38%), Positives = 48/77 (62%), Gaps = 7/77 (9%)
Frame = -3
Query: 462 LLCARVPRKFLD*LDG----NVPRRLGPKRASKIRKLFNLSKEDD---VRRYVVKRVLPA 304
+L ++ +K + +DG +PR+LGPKRA+ I+KLF L KEDD +++ V++R
Sbjct: 108 VLALQIVKKGVAEIDGLTTVTLPRKLGPKRANNIKKLFGLKKEDDPILIKKSVIRRTFKT 167
Query: 303 KEGKENAKPRHKAPKIR 253
+GK+ R K PKI+
Sbjct: 168 AKGKD----RTKCPKIQ 180
>UniRef50_UPI00005A146E Cluster: PREDICTED: similar to 40S ribosomal
protein S6; n=1; Canis lupus familiaris|Rep: PREDICTED:
similar to 40S ribosomal protein S6 - Canis familiaris
Length = 154
Score = 50.4 bits (115), Expect = 2e-05
Identities = 27/53 (50%), Positives = 35/53 (66%), Gaps = 9/53 (16%)
Frame = -3
Query: 420 DGNVPRRLGPKRASKIRKLFNLSKEDD---------VRRYVVKRVLPAKEGKE 289
D PR +GPKRAS+IRKLFNLSKEDD +R+ + KR+ AKE ++
Sbjct: 87 DTTEPRHVGPKRASRIRKLFNLSKEDDAAQNSILRKIRKRIYKRMKEAKEKRQ 139
>UniRef50_O15598 Cluster: Ribosomal protein S6; n=6; Entamoeba
histolytica|Rep: Ribosomal protein S6 - Entamoeba
histolytica
Length = 162
Score = 48.4 bits (110), Expect = 8e-05
Identities = 19/32 (59%), Positives = 28/32 (87%)
Frame = -3
Query: 411 VPRRLGPKRASKIRKLFNLSKEDDVRRYVVKR 316
+P R GP+RAS RKLFNLS++DDV+++V++R
Sbjct: 128 LPMRAGPQRASHFRKLFNLSQKDDVKKFVIRR 159
>UniRef50_A0DEZ7 Cluster: Chromosome undetermined scaffold_48, whole
genome shotgun sequence; n=1; Paramecium
tetraurelia|Rep: Chromosome undetermined scaffold_48,
whole genome shotgun sequence - Paramecium tetraurelia
Length = 304
Score = 46.0 bits (104), Expect = 4e-04
Identities = 28/58 (48%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Frame = -3
Query: 420 DGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKE-GKEN-AKPRHKAPKIR 253
D NVPRRLGPKR +K+R+LF K D RV+ ++E G + K R KAPKI+
Sbjct: 131 DQNVPRRLGPKRLTKLRRLFGFKKAD--------RVISSEEHGPQRYGKKRQKAPKIQ 180
>UniRef50_A2EFM7 Cluster: Ribosomal protein S6e, putative; n=2;
Trichomonas vaginalis G3|Rep: Ribosomal protein S6e,
putative - Trichomonas vaginalis G3
Length = 216
Score = 35.9 bits (79), Expect = 0.46
Identities = 19/39 (48%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Frame = -3
Query: 411 VPRRLGPKRASKIRKLFNLS-KEDDVRRYVVKR-VLPAK 301
VPRR GPKRAS +R +F ++ + D + V+KR V P K
Sbjct: 129 VPRRFGPKRASTLRAMFGITDSKFDASKLVLKREVKPGK 167
>UniRef50_P29327-2 Cluster: Isoform B of P29327 ; n=3; Drosophila
melanogaster|Rep: Isoform B of P29327 - Drosophila
melanogaster (Fruit fly)
Length = 200
Score = 34.3 bits (75), Expect = 1.4
Identities = 20/50 (40%), Positives = 27/50 (54%)
Frame = -3
Query: 408 PRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPK 259
P RLGP R+S I K++ L +EDD V+P K + + K R A K
Sbjct: 119 PCRLGPVRSSNISKIYYLCEEDD-------EVIPVKLQRRHQKKRQNATK 161
>UniRef50_Q4V5Z5 Cluster: IP07914p; n=1; Drosophila
melanogaster|Rep: IP07914p - Drosophila melanogaster
(Fruit fly)
Length = 147
Score = 34.3 bits (75), Expect = 1.4
Identities = 20/50 (40%), Positives = 27/50 (54%)
Frame = -3
Query: 408 PRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPK 259
P RLGP R+S I K++ L +EDD V+P K + + K R A K
Sbjct: 66 PCRLGPVRSSNISKIYYLCEEDD-------EVIPVKLQRRHQKKRQNATK 108
>UniRef50_Q7QSH4 Cluster: GLP_64_20707_19961; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_64_20707_19961 - Giardia lamblia
ATCC 50803
Length = 248
Score = 33.9 bits (74), Expect = 1.8
Identities = 15/19 (78%), Positives = 17/19 (89%)
Frame = -3
Query: 411 VPRRLGPKRASKIRKLFNL 355
VP+RL PKRASKIR+LF L
Sbjct: 135 VPKRLVPKRASKIRRLFGL 153
>UniRef50_UPI0000DAF6F6 Cluster: glucosamine fructose-6-phosphate
aminotransferase (isomerizing); n=1; Campylobacter
concisus 13826|Rep: glucosamine fructose-6-phosphate
aminotransferase (isomerizing) - Campylobacter concisus
13826
Length = 610
Score = 33.5 bits (73), Expect = 2.4
Identities = 17/51 (33%), Positives = 23/51 (45%)
Frame = +3
Query: 24 NTVDHFCGALWLELLESRIEADRLRLISSWRRTLDSFFLCASNLAYSASED 176
NT+ CGA+WL L + +A L + +T D LC N S D
Sbjct: 168 NTLKKVCGAIWLSLANNAAKASELESVEEILKTNDLKALCFINQKDKLSRD 218
>UniRef50_A6L045 Cluster: Putative uncharacterized protein; n=1;
Bacteroides vulgatus ATCC 8482|Rep: Putative
uncharacterized protein - Bacteroides vulgatus (strain
ATCC 8482 / DSM 1447 / NCTC 11154)
Length = 541
Score = 33.1 bits (72), Expect = 3.2
Identities = 18/46 (39%), Positives = 26/46 (56%)
Frame = -3
Query: 462 LLCARVPRKFLD*LDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYV 325
LL + K + L GNVP+ + R ++RK NLS EDD+ Y+
Sbjct: 494 LLRVNLSTKEISMLTGNVPKTINMNRY-RLRKSLNLSSEDDLTDYL 538
>UniRef50_A2F5X7 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 1146
Score = 33.1 bits (72), Expect = 3.2
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = -3
Query: 423 LDGNVPRRLGPKRASKIRK-LFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPK 259
LD + + PK+ S +K + + S EDD K++L + + E KPR K+P+
Sbjct: 1011 LDSSDEEEIKPKQKSPQKKPILSSSSEDDAIPPPKKKLLDSSDDDEEIKPRQKSPQ 1066
>UniRef50_A7EB45 Cluster: Predicted protein; n=1; Sclerotinia
sclerotiorum 1980|Rep: Predicted protein - Sclerotinia
sclerotiorum 1980
Length = 700
Score = 32.7 bits (71), Expect = 4.3
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = -1
Query: 389 NVLPKSVSCSTLAKKMMYVVMSSNACSQPRKEK 291
+V+P+S + S L++ M+ SN S+PRKEK
Sbjct: 69 SVMPESRNSSLLSQSAMFATQVSNRISEPRKEK 101
>UniRef50_A6UN38 Cluster: Response regulator receiver protein; n=1;
Sinorhizobium medicae WSM419|Rep: Response regulator
receiver protein - Sinorhizobium medicae WSM419
Length = 406
Score = 32.3 bits (70), Expect = 5.6
Identities = 18/39 (46%), Positives = 25/39 (64%), Gaps = 5/39 (12%)
Frame = -3
Query: 423 LDGNVPRRLG---PKRASKIRKLFNLSKEDDVRR--YVV 322
LD N+PRRLG P+R + L +L +E D+RR Y+V
Sbjct: 53 LDVNIPRRLGDRKPQRGGGLELLKDLGRESDLRRPTYIV 91
>UniRef50_A4QU80 Cluster: Putative uncharacterized protein; n=1;
Magnaporthe grisea|Rep: Putative uncharacterized protein
- Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 2571
Score = 32.3 bits (70), Expect = 5.6
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 381 KHVWDLDGGVHFHQVNPGISW 443
+HVW+ DGG FH+ I W
Sbjct: 991 RHVWEYDGGAGFHEPRSSIEW 1011
>UniRef50_P43465 Cluster: Raffinose operon transcriptional
regulatory protein rafR; n=4; Lactobacillaceae|Rep:
Raffinose operon transcriptional regulatory protein rafR
- Pediococcus pentosaceus
Length = 277
Score = 32.3 bits (70), Expect = 5.6
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 3/79 (3%)
Frame = -1
Query: 464 CYCAQGCPGNSWIDLMEMYPAV*VPNVLPKSVSCSTLAKKMMYVVM---SSNACSQPRKE 294
CY Q G+ + DL E+Y + +PN L V +L ++ Y ++ ++A + K
Sbjct: 112 CYLRQVQNGHIYADLSELYKVLHIPNSLINDVLLGSLIYRLFYDLLRWYPADATNIKVKS 171
Query: 293 KKMLNPDIRHLRSEASHPC 237
+ N + +L+ S C
Sbjct: 172 TEQFNLAVSYLQENYSTGC 190
>UniRef50_Q98SA3 Cluster: 40S ribosomal protein S6; n=1; Guillardia
theta|Rep: 40S ribosomal protein S6 - Guillardia theta
(Cryptomonas phi)
Length = 209
Score = 31.9 bits (69), Expect = 7.4
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = -3
Query: 414 NVPRRLGPKRASKIRKLFNLSKEDDVRRYVVK 319
N + L KR+S +RK+ L+K DD+R++ +K
Sbjct: 129 NSEKTLTHKRSSNLRKVLCLTKTDDIRKHYIK 160
>UniRef50_Q5CRF6 Cluster: DNAj domain protein; n=2;
Cryptosporidium|Rep: DNAj domain protein -
Cryptosporidium parvum Iowa II
Length = 588
Score = 31.5 bits (68), Expect = 9.8
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = -3
Query: 357 LSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKIRG 250
L ED+ R++ K L K+ K+N K +HK K+RG
Sbjct: 411 LESEDEKERFLDKNDLKQKQ-KQNQKKKHKQQKLRG 445
>UniRef50_A5K0C8 Cluster: Putative uncharacterized protein; n=2;
Plasmodium|Rep: Putative uncharacterized protein -
Plasmodium vivax
Length = 2067
Score = 31.5 bits (68), Expect = 9.8
Identities = 19/62 (30%), Positives = 28/62 (45%)
Frame = -2
Query: 469 ALVIVRKGAQEIPGLT*WKCTPPSRSQTCFQNP*AVQP*QRR*CTSLCRQTRAPSQGRKR 290
A V+ R Q+ G T KCT PS S CF+ A + + + C P +G +
Sbjct: 909 ATVLTRGRHQQNGGSTSAKCTYPSASNECFELQDAPEGIKNAKGVNSCVAPNVPCRGHLK 968
Query: 289 KC 284
+C
Sbjct: 969 RC 970
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 422,561,598
Number of Sequences: 1657284
Number of extensions: 6994623
Number of successful extensions: 18670
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 18253
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18662
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 26450695845
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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