Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0580.Seq
         (473 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein S6|Schizosacch...    77   1e-15
SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein S6|Schizo...    77   1e-15
SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10 |Schizos...    27   1.5  
SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr...    25   4.5  

>SPAC13G6.07c |rps601|rps6-1|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score = 77.0 bits (181), Expect = 1e-15
 Identities = 39/57 (68%), Positives = 47/57 (82%), Gaps = 1/57 (1%)
 Frame = -3

Query: 420 DGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKR-VLPAKEGKENAKPRHKAPKIR 253
           D  VP+RLGPKRASKIR+ FNLSKEDDVR++V++R V+P KEGK   KP  KAPKI+
Sbjct: 126 DVTVPKRLGPKRASKIRRFFNLSKEDDVRQFVIRREVVPKKEGK---KPYTKAPKIQ 179



 Score = 29.5 bits (63), Expect = 0.27
 Identities = 37/126 (29%), Positives = 57/126 (45%), Gaps = 5/126 (3%)
 Frame = -2

Query: 472 LALVIVRKGAQEIPGLT*W---KCTPPSRSQTC--FQNP*AVQP*QRR*CTSLCRQTRAP 308
           LAL I+++G Q+IPGLT     K   P R+     F N  + +   R+    + R+    
Sbjct: 109 LALAIIKQGEQDIPGLTDVTVPKRLGPKRASKIRRFFNL-SKEDDVRQ--FVIRREVVPK 165

Query: 307 SQGRKRKC*TQT*GT*DPRLVTPVVLQXXXXXXXXXXXXXXXXKSSEAEYAKLLAQRKKE 128
            +G+K      T      RLVTP  LQ                +   AE+A+L+A+R  E
Sbjct: 166 KEGKK----PYTKAPKIQRLVTPRTLQHKRHRFALKRRQAEKNREEAAEFAQLMAKRVAE 221

Query: 127 SKVRRQ 110
           +K +R+
Sbjct: 222 AKQKRE 227


>SPAPB1E7.12 |rps602|rps6-2, rps6|40S ribosomal protein
           S6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 239

 Score = 77.0 bits (181), Expect = 1e-15
 Identities = 39/57 (68%), Positives = 47/57 (82%), Gaps = 1/57 (1%)
 Frame = -3

Query: 420 DGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKR-VLPAKEGKENAKPRHKAPKIR 253
           D  VP+RLGPKRASKIR+ FNLSKEDDVR++V++R V+P KEGK   KP  KAPKI+
Sbjct: 126 DVTVPKRLGPKRASKIRRFFNLSKEDDVRQFVIRREVVPKKEGK---KPYTKAPKIQ 179



 Score = 28.7 bits (61), Expect = 0.48
 Identities = 12/17 (70%), Positives = 15/17 (88%)
 Frame = -2

Query: 472 LALVIVRKGAQEIPGLT 422
           LAL IV++G Q+IPGLT
Sbjct: 109 LALAIVKQGEQDIPGLT 125


>SPBC23E6.04c |utp10||U3 snoRNP-associated protein Utp10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1649

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +3

Query: 30  VDHFCGALWLELLESRIEADRLRLIS 107
           +D F  + W+ L++SR + D+ RLIS
Sbjct: 335 LDEFFVSYWVSLIKSRKQKDKKRLIS 360


>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 667

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 39  FCGALWLELLESRIEADRLRLISSW 113
           F G++W E L S      L+LI SW
Sbjct: 247 FTGSIWYEFLCSASSVVALQLIRSW 271


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,721,323
Number of Sequences: 5004
Number of extensions: 28936
Number of successful extensions: 79
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 79
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 182448900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)