Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0580.Seq
         (473 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706...    61   4e-10
03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560...    60   9e-10
01_02_0020 - 10269252-10269314,10269442-10269483,10269759-102702...    29   1.9  
02_05_0956 - 33064104-33066425                                         28   3.3  
10_07_0139 + 13327851-13327880,13327999-13329049,13329089-133296...    27   7.7  

>07_03_1309 +
           25669394-25669399,25669520-25669584,25670543-25670600,
           25670683-25670791,25670872-25671144,25671348-25671589
          Length = 250

 Score = 61.3 bits (142), Expect = 4e-10
 Identities = 34/58 (58%), Positives = 40/58 (68%), Gaps = 2/58 (3%)
 Frame = -3

Query: 420 DGNVPRRLGPKRASKIRKLFNLSKEDDVRRYV--VKRVLPAKEGKENAKPRHKAPKIR 253
           D   PR  GPKRASKIRKLFNLSK+DDVR+YV   +R    K GK+ +    KAPKI+
Sbjct: 128 DTEKPRMRGPKRASKIRKLFNLSKDDDVRKYVNTYRRTFTTKNGKKVS----KAPKIQ 181



 Score = 41.5 bits (93), Expect = 3e-04
 Identities = 40/125 (32%), Positives = 54/125 (43%), Gaps = 3/125 (2%)
 Frame = -2

Query: 466 LVIVRKGAQEIPGLT*W---KCTPPSRSQTCFQNP*AVQP*QRR*CTSLCRQTRAPSQGR 296
           LVIV+KG  ++PGLT     +   P R+    +     +    R   +  R+T     G+
Sbjct: 113 LVIVKKGENDLPGLTDTEKPRMRGPKRASKIRKLFNLSKDDDVRKYVNTYRRTFTTKNGK 172

Query: 295 KRKC*TQT*GT*DPRLVTPVVLQXXXXXXXXXXXXXXXXKSSEAEYAKLLAQRKKESKVR 116
           K     +       RLVTP+ LQ                KS  AEY KLLAQR KE + R
Sbjct: 173 KVSKAPKI-----QRLVTPLTLQRKRARIADKKKRIAKKKSEAAEYQKLLAQRLKEQRER 227

Query: 115 RQEEI 101
           R E +
Sbjct: 228 RSESL 232


>03_03_0207 -
           15455163-15455389,15455623-15455895,15455991-15456099,
           15456186-15456243,15457002-15457066,15457190-15457195
          Length = 245

 Score = 60.1 bits (139), Expect = 9e-10
 Identities = 33/58 (56%), Positives = 40/58 (68%), Gaps = 2/58 (3%)
 Frame = -3

Query: 420 DGNVPRRLGPKRASKIRKLFNLSKEDDVRRYV--VKRVLPAKEGKENAKPRHKAPKIR 253
           D   PR  GPKRASKIRKLFNL+K+DDVR+YV   +R    K GK+ +    KAPKI+
Sbjct: 128 DTEKPRMRGPKRASKIRKLFNLAKDDDVRKYVNTYRRTFTTKNGKKVS----KAPKIQ 181



 Score = 41.9 bits (94), Expect = 3e-04
 Identities = 40/125 (32%), Positives = 54/125 (43%), Gaps = 3/125 (2%)
 Frame = -2

Query: 466 LVIVRKGAQEIPGLT*W---KCTPPSRSQTCFQNP*AVQP*QRR*CTSLCRQTRAPSQGR 296
           LVIV+KG  ++PGLT     +   P R+    +     +    R   +  R+T     G+
Sbjct: 113 LVIVKKGDNDLPGLTDTEKPRMRGPKRASKIRKLFNLAKDDDVRKYVNTYRRTFTTKNGK 172

Query: 295 KRKC*TQT*GT*DPRLVTPVVLQXXXXXXXXXXXXXXXXKSSEAEYAKLLAQRKKESKVR 116
           K     +       RLVTP+ LQ                KS  AEY KLLAQR KE + R
Sbjct: 173 KVSKAPKI-----QRLVTPLTLQRKRARIAQKKQRIAKKKSEAAEYQKLLAQRLKEQRER 227

Query: 115 RQEEI 101
           R E +
Sbjct: 228 RSESL 232


>01_02_0020 -
           10269252-10269314,10269442-10269483,10269759-10270244,
           10270338-10270421,10270491-10270556,10270718-10270810,
           10270901-10271987,10273338-10273362,10273881-10273899
          Length = 654

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 12/23 (52%), Positives = 14/23 (60%)
 Frame = -1

Query: 146 CTEKEGIQGASPGRDQTQAVSFN 78
           C  KE IQGA+PG  Q Q +  N
Sbjct: 599 CLNKEAIQGANPGDSQMQIIMQN 621


>02_05_0956 - 33064104-33066425
          Length = 773

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 12/20 (60%), Positives = 15/20 (75%)
 Frame = +1

Query: 301 LGWEHAFDDITTYIIFFAKV 360
           +G EHA DD++TYII  A V
Sbjct: 23  VGVEHATDDVSTYIIHVAHV 42


>10_07_0139 +
           13327851-13327880,13327999-13329049,13329089-13329648,
           13329757-13329904,13330935-13331024,13331148-13331208,
           13331301-13331450,13331571-13331629,13332148-13332282,
           13333028-13333119,13333210-13333278
          Length = 814

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 11/48 (22%), Positives = 29/48 (60%)
 Frame = -3

Query: 402 RLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPK 259
           ++ PK+A    ++ + + +DD+ R V  + +P+++  + A+   ++PK
Sbjct: 325 KVEPKKAHCSDRISHKTTQDDMERKVPSKYIPSEKKGKTAESCSRSPK 372


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,589,227
Number of Sequences: 37544
Number of extensions: 199989
Number of successful extensions: 506
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 497
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 967140324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)