Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0580.Seq
(473 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0) 81 3e-16
SB_59495| Best HMM Match : RnaseH (HMM E-Value=0.0011) 29 2.0
SB_53135| Best HMM Match : RnaseH (HMM E-Value=0.0016) 29 2.0
SB_54650| Best HMM Match : IncA (HMM E-Value=0.84) 29 2.6
SB_56618| Best HMM Match : DUF1213 (HMM E-Value=0.022) 28 3.4
SB_27725| Best HMM Match : RVT_1 (HMM E-Value=1.9e-19) 28 4.5
SB_5302| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.5
SB_4034| Best HMM Match : Exo_endo_phos (HMM E-Value=9.7e-06) 28 4.5
SB_41444| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.5
SB_32833| Best HMM Match : RVT_1 (HMM E-Value=2) 28 4.5
SB_5647| Best HMM Match : ResIII (HMM E-Value=1.1) 28 4.5
SB_28491| Best HMM Match : RVT_1 (HMM E-Value=0.00037) 27 6.0
SB_15632| Best HMM Match : CBM_5_12 (HMM E-Value=2.9) 27 7.9
SB_4087| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
SB_1926| Best HMM Match : PH (HMM E-Value=1.4e-23) 27 7.9
SB_1380| Best HMM Match : RVT_1 (HMM E-Value=1.4e-38) 27 7.9
SB_27590| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 7.9
>SB_48378| Best HMM Match : Ribosomal_S6e (HMM E-Value=0)
Length = 212
Score = 81.4 bits (192), Expect = 3e-16
Identities = 38/56 (67%), Positives = 45/56 (80%)
Frame = -3
Query: 420 DGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKIR 253
D +PRRLGPKR KIRK+FNLSKEDDVR+YV++R LP KEGK K + KAPKI+
Sbjct: 93 DNTIPRRLGPKRVGKIRKMFNLSKEDDVRQYVIRRPLPEKEGK---KAKSKAPKIQ 145
Score = 43.6 bits (98), Expect = 9e-05
Identities = 46/132 (34%), Positives = 61/132 (46%), Gaps = 8/132 (6%)
Frame = -2
Query: 472 LALVIVRKGAQEIPGLT*WKCTPPSRSQTCFQNP*AVQP*QRR*CTS--------LCRQT 317
L+LVIV+KG Q+IPGLT T P R P V ++ S + R+
Sbjct: 76 LSLVIVKKGEQDIPGLT--DNTIPRRL-----GPKRVGKIRKMFNLSKEDDVRQYVIRRP 128
Query: 316 RAPSQGRKRKC*TQT*GT*DPRLVTPVVLQXXXXXXXXXXXXXXXXKSSEAEYAKLLAQR 137
+G+K K RLVTPVVLQ K A+YAKLLA+R
Sbjct: 129 LPEKEGKKAKSKAPK----IQRLVTPVVLQRKRKRLALKRQRAQKCKQEAADYAKLLAKR 184
Query: 136 KKESKVRRQEEI 101
KE+K +R E++
Sbjct: 185 AKEAKEKRHEQL 196
>SB_59495| Best HMM Match : RnaseH (HMM E-Value=0.0011)
Length = 515
Score = 29.1 bits (62), Expect = 2.0
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Frame = -1
Query: 437 NSW---IDLMEMYPAV*VPNVLPKSVSCSTLAKKMMYVVMSSNACSQPRKEKKMLNPDIR 267
N W +DL + Y +V + K + Y V + C+ PR K+L P +
Sbjct: 14 NCWMASLDLKDAYYSVHIHPEFQKFLKFKYNGILYKYSVFPNGLCTCPRNFTKLLKPPLS 73
Query: 266 HLR 258
HLR
Sbjct: 74 HLR 76
>SB_53135| Best HMM Match : RnaseH (HMM E-Value=0.0016)
Length = 515
Score = 29.1 bits (62), Expect = 2.0
Identities = 18/63 (28%), Positives = 27/63 (42%), Gaps = 3/63 (4%)
Frame = -1
Query: 437 NSW---IDLMEMYPAV*VPNVLPKSVSCSTLAKKMMYVVMSSNACSQPRKEKKMLNPDIR 267
N W +DL + Y +V + K + Y V + C+ PR K+L P +
Sbjct: 14 NCWMASLDLKDAYYSVHIHPEFQKFLKFKYNGILYKYSVFPNGLCTCPRNFTKLLKPPLS 73
Query: 266 HLR 258
HLR
Sbjct: 74 HLR 76
>SB_54650| Best HMM Match : IncA (HMM E-Value=0.84)
Length = 291
Score = 28.7 bits (61), Expect = 2.6
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -3
Query: 417 GNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVK 319
G+ + GP + SKI K+ ++DDV+ VVK
Sbjct: 221 GSEAAKTGPNKLSKIDKVILAVEDDDVQEIVVK 253
>SB_56618| Best HMM Match : DUF1213 (HMM E-Value=0.022)
Length = 1421
Score = 28.3 bits (60), Expect = 3.4
Identities = 11/26 (42%), Positives = 20/26 (76%)
Frame = -2
Query: 175 SSEAEYAKLLAQRKKESKVRRQEEIK 98
++EAE +L Q+K+E K +R+EE++
Sbjct: 1173 AAEAERRRLEVQKKREEKKKREEEMR 1198
>SB_27725| Best HMM Match : RVT_1 (HMM E-Value=1.9e-19)
Length = 262
Score = 27.9 bits (59), Expect = 4.5
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +1
Query: 268 LMSGFSIFFSFLGWEHAFDDITTYIIFFA 354
L G S+FF+F+ E AFD + II++A
Sbjct: 91 LAKGKSLFFAFVDLEKAFDRVPRDIIWWA 119
>SB_5302| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 949
Score = 27.9 bits (59), Expect = 4.5
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 268 LMSGFSIFFSFLGWEHAFDDITTYIIFFA 354
L G S+FF+F+ E AFD + I+++A
Sbjct: 628 LAKGKSLFFAFVDLEKAFDRVPRVILWWA 656
>SB_4034| Best HMM Match : Exo_endo_phos (HMM E-Value=9.7e-06)
Length = 609
Score = 27.9 bits (59), Expect = 4.5
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 268 LMSGFSIFFSFLGWEHAFDDITTYIIFFA 354
L G S+FF+F+ E AFD + I+++A
Sbjct: 545 LAKGKSLFFAFVDLEKAFDRVPRVILWWA 573
>SB_41444| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 194
Score = 27.9 bits (59), Expect = 4.5
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = -3
Query: 369 KLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPK 259
+ F+++KEDD+ Y++ L + K NA ++ P+
Sbjct: 137 RAFDVTKEDDITMYIIITPLFMRARKNNAMEYNQKPR 173
>SB_32833| Best HMM Match : RVT_1 (HMM E-Value=2)
Length = 317
Score = 27.9 bits (59), Expect = 4.5
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 268 LMSGFSIFFSFLGWEHAFDDITTYIIFFA 354
L G S+FF+F+ E AFD + I+++A
Sbjct: 196 LAKGKSLFFAFVDLEKAFDRVPRVILWWA 224
>SB_5647| Best HMM Match : ResIII (HMM E-Value=1.1)
Length = 1101
Score = 27.9 bits (59), Expect = 4.5
Identities = 11/37 (29%), Positives = 22/37 (59%)
Frame = -3
Query: 384 ASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPR 274
A ++ + + DDV+ ++K ++P KEG E+ P+
Sbjct: 22 AGLVQNILDEDIPDDVKHRLLKPLVPEKEGPESLDPK 58
>SB_28491| Best HMM Match : RVT_1 (HMM E-Value=0.00037)
Length = 214
Score = 27.5 bits (58), Expect = 6.0
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 268 LMSGFSIFFSFLGWEHAFDDITTYIIFFA 354
L G S+FF+F+ E AFD + I+++A
Sbjct: 26 LAKGKSLFFAFVDLEKAFDRVPHVILWWA 54
>SB_15632| Best HMM Match : CBM_5_12 (HMM E-Value=2.9)
Length = 748
Score = 27.1 bits (57), Expect = 7.9
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = -3
Query: 384 ASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKP 277
A ++ + + DDV+ ++K ++P KEG E+ P
Sbjct: 22 AGLVQNILDEDIPDDVKHRLLKPLVPEKEGPESLDP 57
>SB_4087| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1095
Score = 27.1 bits (57), Expect = 7.9
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = -3
Query: 384 ASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKP 277
A ++ + + DDV+ ++K ++P KEG E+ P
Sbjct: 22 AGLVQNILDEDIPDDVKHRLLKPLVPEKEGPESLDP 57
>SB_1926| Best HMM Match : PH (HMM E-Value=1.4e-23)
Length = 998
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Frame = +3
Query: 237 TGVTSLGS*VPYVWV*HFLFLPWLG--ARV*RH 329
T + +L + VW+ H +F PW+G A++ RH
Sbjct: 683 TQIVALRTKFKRVWIYHLMFNPWVGQVAKLERH 715
>SB_1380| Best HMM Match : RVT_1 (HMM E-Value=1.4e-38)
Length = 622
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 268 LMSGFSIFFSFLGWEHAFDDITTYIIFFA 354
L G S+FF+F+ E AFD + I+++A
Sbjct: 233 LAKGKSLFFAFVDLEKAFDRVPRDILWWA 261
>SB_27590| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 185
Score = 27.1 bits (57), Expect = 7.9
Identities = 12/29 (41%), Positives = 19/29 (65%)
Frame = +1
Query: 268 LMSGFSIFFSFLGWEHAFDDITTYIIFFA 354
L G S+FF+F+ E AFD + I+++A
Sbjct: 121 LAKGKSLFFAFVDLEKAFDRVPRDILWWA 149
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,211,282
Number of Sequences: 59808
Number of extensions: 220416
Number of successful extensions: 646
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 994359969
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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