Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0580.Seq
(473 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
L07881-1|AAA28871.1| 248|Drosophila melanogaster ribosomal prot... 81 8e-16
L02075-1|AAB05985.1| 248|Drosophila melanogaster ribosomal prot... 81 8e-16
L02074-4|AAB05982.1| 248|Drosophila melanogaster ribosomal prot... 81 8e-16
L01658-1|AAC34306.1| 248|Drosophila melanogaster ribosomal prot... 81 8e-16
AY058620-1|AAL13849.1| 217|Drosophila melanogaster LD31286p pro... 81 8e-16
AE014298-1080|AAF46288.1| 217|Drosophila melanogaster CG10944-P... 81 8e-16
AE014298-1079|AAN09219.1| 251|Drosophila melanogaster CG10944-P... 81 8e-16
AE014298-1078|AAN09218.1| 248|Drosophila melanogaster CG10944-P... 81 8e-16
L02074-3|AAB05984.1| 200|Drosophila melanogaster protein ( Dros... 34 0.085
L02074-2|AAB05983.1| 200|Drosophila melanogaster protein ( Dros... 34 0.085
BT022735-1|AAY55151.1| 149|Drosophila melanogaster IP07614p pro... 34 0.085
BT022511-1|AAY54927.1| 147|Drosophila melanogaster IP07914p pro... 34 0.085
AE014298-1077|AAS65274.1| 135|Drosophila melanogaster CG33222-P... 34 0.085
AE014298-1076|AAF46287.3| 135|Drosophila melanogaster CG11386-P... 34 0.085
AY075483-1|AAL68293.1| 313|Drosophila melanogaster RE39480p pro... 31 1.1
AE013599-905|AAF58912.1| 313|Drosophila melanogaster CG12926-PA... 31 1.1
>L07881-1|AAA28871.1| 248|Drosophila melanogaster ribosomal protein
S6 protein.
Length = 248
Score = 81.0 bits (191), Expect = 8e-16
Identities = 40/56 (71%), Positives = 46/56 (82%)
Frame = -3
Query: 420 DGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKIR 253
D +PRRLGPKRASKIRKL+NLSKEDDVRR+VV+R LPA K+N K KAPKI+
Sbjct: 126 DTTIPRRLGPKRASKIRKLYNLSKEDDVRRFVVRRPLPA---KDNKKATSKAPKIQ 178
Score = 46.8 bits (106), Expect = 1e-05
Identities = 43/124 (34%), Positives = 58/124 (46%), Gaps = 2/124 (1%)
Frame = -2
Query: 472 LALVIVRKGAQEIPGLT*WKCTPPSRSQTCFQNP*AVQP*QRR*CTSLCRQ--TRAPSQG 299
LALV+++KG ++IPGLT T P R + ++ R+ R P
Sbjct: 109 LALVVLKKGEKDIPGLT--DTTIPRRLGP--KRASKIRKLYNLSKEDDVRRFVVRRPLPA 164
Query: 298 RKRKC*TQT*GT*DPRLVTPVVLQXXXXXXXXXXXXXXXXKSSEAEYAKLLAQRKKESKV 119
+ K T RL+TPVVLQ K + A+YAKLL QRKKESK
Sbjct: 165 KDNKKATSK-APKIQRLITPVVLQRKHRRIALKKKRQIASKEASADYAKLLVQRKKESKA 223
Query: 118 RRQE 107
+R+E
Sbjct: 224 KREE 227
>L02075-1|AAB05985.1| 248|Drosophila melanogaster ribosomal protein
S6 protein.
Length = 248
Score = 81.0 bits (191), Expect = 8e-16
Identities = 40/56 (71%), Positives = 46/56 (82%)
Frame = -3
Query: 420 DGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKIR 253
D +PRRLGPKRASKIRKL+NLSKEDDVRR+VV+R LPA K+N K KAPKI+
Sbjct: 126 DTTIPRRLGPKRASKIRKLYNLSKEDDVRRFVVRRPLPA---KDNKKATSKAPKIQ 178
Score = 46.8 bits (106), Expect = 1e-05
Identities = 43/124 (34%), Positives = 58/124 (46%), Gaps = 2/124 (1%)
Frame = -2
Query: 472 LALVIVRKGAQEIPGLT*WKCTPPSRSQTCFQNP*AVQP*QRR*CTSLCRQ--TRAPSQG 299
LALV+++KG ++IPGLT T P R + ++ R+ R P
Sbjct: 109 LALVVLKKGEKDIPGLT--DTTIPRRLGP--KRASKIRKLYNLSKEDDVRRFVVRRPLPA 164
Query: 298 RKRKC*TQT*GT*DPRLVTPVVLQXXXXXXXXXXXXXXXXKSSEAEYAKLLAQRKKESKV 119
+ K T RL+TPVVLQ K + A+YAKLL QRKKESK
Sbjct: 165 KDNKKATSK-APKIQRLITPVVLQRKHRRIALKKKRQIASKEASADYAKLLVQRKKESKA 223
Query: 118 RRQE 107
+R+E
Sbjct: 224 KREE 227
>L02074-4|AAB05982.1| 248|Drosophila melanogaster ribosomal protein
S6 protein.
Length = 248
Score = 81.0 bits (191), Expect = 8e-16
Identities = 40/56 (71%), Positives = 46/56 (82%)
Frame = -3
Query: 420 DGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKIR 253
D +PRRLGPKRASKIRKL+NLSKEDDVRR+VV+R LPA K+N K KAPKI+
Sbjct: 126 DTTIPRRLGPKRASKIRKLYNLSKEDDVRRFVVRRPLPA---KDNKKATSKAPKIQ 178
Score = 46.8 bits (106), Expect = 1e-05
Identities = 43/124 (34%), Positives = 58/124 (46%), Gaps = 2/124 (1%)
Frame = -2
Query: 472 LALVIVRKGAQEIPGLT*WKCTPPSRSQTCFQNP*AVQP*QRR*CTSLCRQ--TRAPSQG 299
LALV+++KG ++IPGLT T P R + ++ R+ R P
Sbjct: 109 LALVVLKKGEKDIPGLT--DTTIPRRLGP--KRASKIRKLYNLSKEDDVRRFVVRRPLPA 164
Query: 298 RKRKC*TQT*GT*DPRLVTPVVLQXXXXXXXXXXXXXXXXKSSEAEYAKLLAQRKKESKV 119
+ K T RL+TPVVLQ K + A+YAKLL QRKKESK
Sbjct: 165 KDNKKATSK-APKIQRLITPVVLQRKHRRIALKKKRQIASKEASADYAKLLVQRKKESKA 223
Query: 118 RRQE 107
+R+E
Sbjct: 224 KREE 227
>L01658-1|AAC34306.1| 248|Drosophila melanogaster ribosomal protein
S6 protein.
Length = 248
Score = 81.0 bits (191), Expect = 8e-16
Identities = 40/56 (71%), Positives = 46/56 (82%)
Frame = -3
Query: 420 DGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKIR 253
D +PRRLGPKRASKIRKL+NLSKEDDVRR+VV+R LPA K+N K KAPKI+
Sbjct: 126 DTTIPRRLGPKRASKIRKLYNLSKEDDVRRFVVRRPLPA---KDNKKATSKAPKIQ 178
Score = 46.8 bits (106), Expect = 1e-05
Identities = 43/124 (34%), Positives = 58/124 (46%), Gaps = 2/124 (1%)
Frame = -2
Query: 472 LALVIVRKGAQEIPGLT*WKCTPPSRSQTCFQNP*AVQP*QRR*CTSLCRQ--TRAPSQG 299
LALV+++KG ++IPGLT T P R + ++ R+ R P
Sbjct: 109 LALVVLKKGEKDIPGLT--DTTIPRRLGP--KRASKIRKLYNLSKEDDVRRFVVRRPLPA 164
Query: 298 RKRKC*TQT*GT*DPRLVTPVVLQXXXXXXXXXXXXXXXXKSSEAEYAKLLAQRKKESKV 119
+ K T RL+TPVVLQ K + A+YAKLL QRKKESK
Sbjct: 165 KDNKKATSK-APKIQRLITPVVLQRKHRRIALKKKRQIASKEASADYAKLLVQRKKESKA 223
Query: 118 RRQE 107
+R+E
Sbjct: 224 KREE 227
>AY058620-1|AAL13849.1| 217|Drosophila melanogaster LD31286p
protein.
Length = 217
Score = 81.0 bits (191), Expect = 8e-16
Identities = 40/56 (71%), Positives = 46/56 (82%)
Frame = -3
Query: 420 DGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKIR 253
D +PRRLGPKRASKIRKL+NLSKEDDVRR+VV+R LPA K+N K KAPKI+
Sbjct: 95 DTTIPRRLGPKRASKIRKLYNLSKEDDVRRFVVRRPLPA---KDNKKATSKAPKIQ 147
Score = 46.8 bits (106), Expect = 1e-05
Identities = 43/124 (34%), Positives = 58/124 (46%), Gaps = 2/124 (1%)
Frame = -2
Query: 472 LALVIVRKGAQEIPGLT*WKCTPPSRSQTCFQNP*AVQP*QRR*CTSLCRQ--TRAPSQG 299
LALV+++KG ++IPGLT T P R + ++ R+ R P
Sbjct: 78 LALVVLKKGEKDIPGLT--DTTIPRRLGP--KRASKIRKLYNLSKEDDVRRFVVRRPLPA 133
Query: 298 RKRKC*TQT*GT*DPRLVTPVVLQXXXXXXXXXXXXXXXXKSSEAEYAKLLAQRKKESKV 119
+ K T RL+TPVVLQ K + A+YAKLL QRKKESK
Sbjct: 134 KDNKKATSK-APKIQRLITPVVLQRKHRRIALKKKRQIASKEASADYAKLLVQRKKESKA 192
Query: 118 RRQE 107
+R+E
Sbjct: 193 KREE 196
>AE014298-1080|AAF46288.1| 217|Drosophila melanogaster CG10944-PA,
isoform A protein.
Length = 217
Score = 81.0 bits (191), Expect = 8e-16
Identities = 40/56 (71%), Positives = 46/56 (82%)
Frame = -3
Query: 420 DGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKIR 253
D +PRRLGPKRASKIRKL+NLSKEDDVRR+VV+R LPA K+N K KAPKI+
Sbjct: 95 DTTIPRRLGPKRASKIRKLYNLSKEDDVRRFVVRRPLPA---KDNKKATSKAPKIQ 147
Score = 46.8 bits (106), Expect = 1e-05
Identities = 43/124 (34%), Positives = 58/124 (46%), Gaps = 2/124 (1%)
Frame = -2
Query: 472 LALVIVRKGAQEIPGLT*WKCTPPSRSQTCFQNP*AVQP*QRR*CTSLCRQ--TRAPSQG 299
LALV+++KG ++IPGLT T P R + ++ R+ R P
Sbjct: 78 LALVVLKKGEKDIPGLT--DTTIPRRLGP--KRASKIRKLYNLSKEDDVRRFVVRRPLPA 133
Query: 298 RKRKC*TQT*GT*DPRLVTPVVLQXXXXXXXXXXXXXXXXKSSEAEYAKLLAQRKKESKV 119
+ K T RL+TPVVLQ K + A+YAKLL QRKKESK
Sbjct: 134 KDNKKATSK-APKIQRLITPVVLQRKHRRIALKKKRQIASKEASADYAKLLVQRKKESKA 192
Query: 118 RRQE 107
+R+E
Sbjct: 193 KREE 196
>AE014298-1079|AAN09219.1| 251|Drosophila melanogaster CG10944-PC,
isoform C protein.
Length = 251
Score = 81.0 bits (191), Expect = 8e-16
Identities = 40/56 (71%), Positives = 46/56 (82%)
Frame = -3
Query: 420 DGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKIR 253
D +PRRLGPKRASKIRKL+NLSKEDDVRR+VV+R LPA K+N K KAPKI+
Sbjct: 129 DTTIPRRLGPKRASKIRKLYNLSKEDDVRRFVVRRPLPA---KDNKKATSKAPKIQ 181
Score = 46.8 bits (106), Expect = 1e-05
Identities = 43/124 (34%), Positives = 58/124 (46%), Gaps = 2/124 (1%)
Frame = -2
Query: 472 LALVIVRKGAQEIPGLT*WKCTPPSRSQTCFQNP*AVQP*QRR*CTSLCRQ--TRAPSQG 299
LALV+++KG ++IPGLT T P R + ++ R+ R P
Sbjct: 112 LALVVLKKGEKDIPGLT--DTTIPRRLGP--KRASKIRKLYNLSKEDDVRRFVVRRPLPA 167
Query: 298 RKRKC*TQT*GT*DPRLVTPVVLQXXXXXXXXXXXXXXXXKSSEAEYAKLLAQRKKESKV 119
+ K T RL+TPVVLQ K + A+YAKLL QRKKESK
Sbjct: 168 KDNKKATSK-APKIQRLITPVVLQRKHRRIALKKKRQIASKEASADYAKLLVQRKKESKA 226
Query: 118 RRQE 107
+R+E
Sbjct: 227 KREE 230
>AE014298-1078|AAN09218.1| 248|Drosophila melanogaster CG10944-PB,
isoform B protein.
Length = 248
Score = 81.0 bits (191), Expect = 8e-16
Identities = 40/56 (71%), Positives = 46/56 (82%)
Frame = -3
Query: 420 DGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKIR 253
D +PRRLGPKRASKIRKL+NLSKEDDVRR+VV+R LPA K+N K KAPKI+
Sbjct: 126 DTTIPRRLGPKRASKIRKLYNLSKEDDVRRFVVRRPLPA---KDNKKATSKAPKIQ 178
Score = 46.8 bits (106), Expect = 1e-05
Identities = 43/124 (34%), Positives = 58/124 (46%), Gaps = 2/124 (1%)
Frame = -2
Query: 472 LALVIVRKGAQEIPGLT*WKCTPPSRSQTCFQNP*AVQP*QRR*CTSLCRQ--TRAPSQG 299
LALV+++KG ++IPGLT T P R + ++ R+ R P
Sbjct: 109 LALVVLKKGEKDIPGLT--DTTIPRRLGP--KRASKIRKLYNLSKEDDVRRFVVRRPLPA 164
Query: 298 RKRKC*TQT*GT*DPRLVTPVVLQXXXXXXXXXXXXXXXXKSSEAEYAKLLAQRKKESKV 119
+ K T RL+TPVVLQ K + A+YAKLL QRKKESK
Sbjct: 165 KDNKKATSK-APKIQRLITPVVLQRKHRRIALKKKRQIASKEASADYAKLLVQRKKESKA 223
Query: 118 RRQE 107
+R+E
Sbjct: 224 KREE 227
>L02074-3|AAB05984.1| 200|Drosophila melanogaster protein (
Drosophila melanogasterribosomal protein S6 gene and two
potential alternativelyspliced proteins, complete cds.
).
Length = 200
Score = 34.3 bits (75), Expect = 0.085
Identities = 20/50 (40%), Positives = 27/50 (54%)
Frame = -3
Query: 408 PRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPK 259
P RLGP R+S I K++ L +EDD V+P K + + K R A K
Sbjct: 119 PCRLGPVRSSNISKIYYLCEEDD-------EVIPVKLQRRHQKKRQNATK 161
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/18 (72%), Positives = 14/18 (77%)
Frame = -2
Query: 166 AEYAKLLAQRKKESKVRR 113
AEY KLL +RKKESK R
Sbjct: 165 AEYVKLLVKRKKESKANR 182
>L02074-2|AAB05983.1| 200|Drosophila melanogaster protein (
Drosophila melanogasterribosomal protein S6 gene and two
potential alternativelyspliced proteins, complete cds.
).
Length = 200
Score = 34.3 bits (75), Expect = 0.085
Identities = 20/50 (40%), Positives = 27/50 (54%)
Frame = -3
Query: 408 PRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPK 259
P RLGP R+S I K++ L +EDD V+P K + + K R A K
Sbjct: 119 PCRLGPVRSSNISKIYYLCEEDD-------EVIPVKLQRRHQKKRQNATK 161
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/18 (72%), Positives = 14/18 (77%)
Frame = -2
Query: 166 AEYAKLLAQRKKESKVRR 113
AEY KLL +RKKESK R
Sbjct: 165 AEYVKLLVKRKKESKANR 182
>BT022735-1|AAY55151.1| 149|Drosophila melanogaster IP07614p
protein.
Length = 149
Score = 34.3 bits (75), Expect = 0.085
Identities = 20/50 (40%), Positives = 27/50 (54%)
Frame = -3
Query: 408 PRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPK 259
P RLGP R+S I K++ L +EDD V+P K + + K R A K
Sbjct: 68 PCRLGPVRSSNISKIYYLCEEDD-------EVIPVKLQRRHQKKRQNATK 110
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/18 (72%), Positives = 14/18 (77%)
Frame = -2
Query: 166 AEYAKLLAQRKKESKVRR 113
AEY KLL +RKKESK R
Sbjct: 114 AEYVKLLVKRKKESKANR 131
>BT022511-1|AAY54927.1| 147|Drosophila melanogaster IP07914p
protein.
Length = 147
Score = 34.3 bits (75), Expect = 0.085
Identities = 20/50 (40%), Positives = 27/50 (54%)
Frame = -3
Query: 408 PRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPK 259
P RLGP R+S I K++ L +EDD V+P K + + K R A K
Sbjct: 66 PCRLGPVRSSNISKIYYLCEEDD-------EVIPVKLQRRHQKKRQNATK 108
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/18 (72%), Positives = 14/18 (77%)
Frame = -2
Query: 166 AEYAKLLAQRKKESKVRR 113
AEY KLL +RKKESK R
Sbjct: 112 AEYVKLLVKRKKESKANR 129
>AE014298-1077|AAS65274.1| 135|Drosophila melanogaster CG33222-PA
protein.
Length = 135
Score = 34.3 bits (75), Expect = 0.085
Identities = 20/50 (40%), Positives = 27/50 (54%)
Frame = -3
Query: 408 PRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPK 259
P RLGP R+S I K++ L +EDD V+P K + + K R A K
Sbjct: 54 PCRLGPVRSSNISKIYYLCEEDD-------EVIPVKLQRRHQKKRQNATK 96
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/18 (72%), Positives = 14/18 (77%)
Frame = -2
Query: 166 AEYAKLLAQRKKESKVRR 113
AEY KLL +RKKESK R
Sbjct: 100 AEYVKLLVKRKKESKANR 117
>AE014298-1076|AAF46287.3| 135|Drosophila melanogaster CG11386-PA
protein.
Length = 135
Score = 34.3 bits (75), Expect = 0.085
Identities = 20/50 (40%), Positives = 27/50 (54%)
Frame = -3
Query: 408 PRRLGPKRASKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPK 259
P RLGP R+S I K++ L +EDD V+P K + + K R A K
Sbjct: 54 PCRLGPVRSSNISKIYYLCEEDD-------EVIPVKLQRRHQKKRQNATK 96
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/18 (72%), Positives = 14/18 (77%)
Frame = -2
Query: 166 AEYAKLLAQRKKESKVRR 113
AEY KLL +RKKESK R
Sbjct: 100 AEYVKLLVKRKKESKANR 117
>AY075483-1|AAL68293.1| 313|Drosophila melanogaster RE39480p
protein.
Length = 313
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = -3
Query: 384 ASKIRKLFNL-SKEDDVRRYVVKRVLPAKEGKEN 286
+ KIRK F++ SK D + +YV K LPA+ G N
Sbjct: 223 SEKIRKRFHIHSKLDSLYKYVPKECLPAEYGGSN 256
>AE013599-905|AAF58912.1| 313|Drosophila melanogaster CG12926-PA
protein.
Length = 313
Score = 30.7 bits (66), Expect = 1.1
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Frame = -3
Query: 384 ASKIRKLFNL-SKEDDVRRYVVKRVLPAKEGKEN 286
+ KIRK F++ SK D + +YV K LPA+ G N
Sbjct: 223 SEKIRKRFHIHSKLDSLYKYVPKECLPAEYGGSN 256
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,728,802
Number of Sequences: 53049
Number of extensions: 321262
Number of successful extensions: 884
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 876
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1622204766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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