Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0580.Seq
         (473 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical ...    56   1e-08
U00046-1|AAC47044.3| 2560|Caenorhabditis elegans Temporarily ass...    30   0.98 
AB206836-1|BAD91087.1| 2502|Caenorhabditis elegans Ten-1S protein.     30   0.98 
AB206835-1|BAD91086.1| 2684|Caenorhabditis elegans Ten-1L protein.     30   0.98 
AL023847-1|CAA19545.1|  364|Caenorhabditis elegans Hypothetical ...    29   2.3  
Z81068-6|CAB02986.1|  725|Caenorhabditis elegans Hypothetical pr...    28   3.9  
Z81593-10|CAI94504.1|  349|Caenorhabditis elegans Hypothetical p...    27   5.2  
Z99281-31|CAI79273.1|  160|Caenorhabditis elegans Hypothetical p...    27   9.1  

>AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical
           protein Y71A12B.1 protein.
          Length = 246

 Score = 56.0 bits (129), Expect = 1e-08
 Identities = 24/33 (72%), Positives = 29/33 (87%)
 Frame = -3

Query: 420 DGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVV 322
           D  +PR+LGPKRASKIRKLFNL+K DDV +YV+
Sbjct: 126 DSVLPRKLGPKRASKIRKLFNLTKHDDVTKYVI 158


>U00046-1|AAC47044.3| 2560|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 152, isoform a protein.
          Length = 2560

 Score = 29.9 bits (64), Expect = 0.98
 Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 3/81 (3%)
 Frame = -1

Query: 470 GSCYCAQGCPGNSWIDLMEMYPAV*VPNVLPKSVSCSTLAKKMMYVVMSSNACSQPRKEK 291
           G+CYC  G  GN      +    V      P+     T + K     +     S+ +KE 
Sbjct: 428 GTCYCMDGWRGNDCSVFADAIVHVPQAQSPPRRGQEPTESSKTRKAQVKPTPTSEKKKES 487

Query: 290 KMLNPDI---RHLRSEASHPC 237
           + L   I     + +E+SHPC
Sbjct: 488 RELQKPIIATVQVPTESSHPC 508


>AB206836-1|BAD91087.1| 2502|Caenorhabditis elegans Ten-1S protein.
          Length = 2502

 Score = 29.9 bits (64), Expect = 0.98
 Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 3/81 (3%)
 Frame = -1

Query: 470 GSCYCAQGCPGNSWIDLMEMYPAV*VPNVLPKSVSCSTLAKKMMYVVMSSNACSQPRKEK 291
           G+CYC  G  GN      +    V      P+     T + K     +     S+ +KE 
Sbjct: 370 GTCYCMDGWRGNDCSVFADAIVHVPQAQSPPRRGQEPTESSKTRKAQVKPTPTSEKKKES 429

Query: 290 KMLNPDI---RHLRSEASHPC 237
           + L   I     + +E+SHPC
Sbjct: 430 RELQKPIIATVQVPTESSHPC 450


>AB206835-1|BAD91086.1| 2684|Caenorhabditis elegans Ten-1L protein.
          Length = 2684

 Score = 29.9 bits (64), Expect = 0.98
 Identities = 21/81 (25%), Positives = 32/81 (39%), Gaps = 3/81 (3%)
 Frame = -1

Query: 470 GSCYCAQGCPGNSWIDLMEMYPAV*VPNVLPKSVSCSTLAKKMMYVVMSSNACSQPRKEK 291
           G+CYC  G  GN      +    V      P+     T + K     +     S+ +KE 
Sbjct: 552 GTCYCMDGWRGNDCSVFADAIVHVPQAQSPPRRGQEPTESSKTRKAQVKPTPTSEKKKES 611

Query: 290 KMLNPDI---RHLRSEASHPC 237
           + L   I     + +E+SHPC
Sbjct: 612 RELQKPIIATVQVPTESSHPC 632


>AL023847-1|CAA19545.1|  364|Caenorhabditis elegans Hypothetical
           protein Y57A10C.3 protein.
          Length = 364

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 13/46 (28%), Positives = 25/46 (54%)
 Frame = +2

Query: 92  PAFDLFLATHLGFLLSLCKQFSIFSLRGLALSETLLLQSETMTSTL 229
           P F ++    +G L+++C Q SIFS+  L + +  +L ++     L
Sbjct: 70  PFFGIWFELIIGKLITMCYQLSIFSIGNLEIRKFYVLWTDDSNKML 115


>Z81068-6|CAB02986.1|  725|Caenorhabditis elegans Hypothetical
           protein F25H5.5 protein.
          Length = 725

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -1

Query: 380 PKSVSCSTLAKKMMYVVMSSNACSQPRKEKKMLNPDIRHLRS 255
           PKS+  S   KK +   MS+    +  + +KM   D  HL++
Sbjct: 105 PKSLLTSETLKKKLQASMSAKRRKEQEQRRKMYEEDNEHLKA 146


>Z81593-10|CAI94504.1|  349|Caenorhabditis elegans Hypothetical
           protein T20B3.15 protein.
          Length = 349

 Score = 27.5 bits (58), Expect = 5.2
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = +2

Query: 128 FLLSLCKQFSIFSLRGLALSETLLL 202
           FL+S    FSIF++ G A S+ L+L
Sbjct: 283 FLMSTVSVFSIFAIGGFAFSDDLIL 307


>Z99281-31|CAI79273.1|  160|Caenorhabditis elegans Hypothetical
           protein Y57G11C.51 protein.
          Length = 160

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 14/47 (29%), Positives = 25/47 (53%)
 Frame = -3

Query: 381 SKIRKLFNLSKEDDVRRYVVKRVLPAKEGKENAKPRHKAPKIRG*SP 241
           S+  +L++LSK     +   K++ P+K+ +ENAK        +G  P
Sbjct: 3   SQPAQLYDLSKRAIAAKESYKKMSPSKKKEENAKSNANRASRKGSGP 49


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,662,626
Number of Sequences: 27780
Number of extensions: 166350
Number of successful extensions: 418
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 418
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 860942358
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)