Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0580.Seq
         (473 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   2.9  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   2.9  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    22   3.8  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   6.7  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   6.7  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   6.7  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   6.7  
DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    21   8.9  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   8.9  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 452 QGCPGNSWIDLMEM 411
           QG P NSW+ + E+
Sbjct: 304 QGFPSNSWVAINEL 317


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = -1

Query: 452 QGCPGNSWIDLMEM 411
           QG P NSW+ + E+
Sbjct: 272 QGFPSNSWVAINEL 285


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = -3

Query: 159 MLNCLHRERRNPRCVARKRSNAGGQLQCVI 70
           +L  +   +RNP  V RK+S+   +L+ ++
Sbjct: 112 LLGIVDDYQRNPSVVGRKKSSGWRKLRNIV 141


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = -2

Query: 472 LALVIVRKGAQEIPGLT*WKC 410
           LA ++      E+PG + W C
Sbjct: 358 LAFLVYPSAVLELPGSSIWSC 378


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 7/21 (33%), Positives = 11/21 (52%)
 Frame = -2

Query: 472 LALVIVRKGAQEIPGLT*WKC 410
           LA ++      E+PG + W C
Sbjct: 411 LAFLVYPSAVLELPGSSIWSC 431


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -1

Query: 395  VPNVLPKSVSCSTLAKKMMYV 333
            VP++ P+ V C+ L  + + V
Sbjct: 1110 VPSIPPEDVRCAALTSQSLQV 1130


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 7/21 (33%), Positives = 13/21 (61%)
 Frame = -1

Query: 395  VPNVLPKSVSCSTLAKKMMYV 333
            VP++ P+ V C+ L  + + V
Sbjct: 1106 VPSIPPEDVRCAALTSQSLQV 1126


>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = -3

Query: 471 WLLLLCARVPR 439
           WLL LC  VP+
Sbjct: 179 WLLALCLAVPQ 189


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 10/34 (29%), Positives = 18/34 (52%)
 Frame = +2

Query: 131 LLSLCKQFSIFSLRGLALSETLLLQSETMTSTLQ 232
           ++S  K F   SLR +   ET++  +E +   L+
Sbjct: 830 MISSVKSFMELSLRSVKDRETIISAAEKIAEELK 863


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,102
Number of Sequences: 438
Number of extensions: 1914
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12805416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)