Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0580.Seq
         (473 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)              60   6e-10
At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) riboso...    60   8e-10
At3g24080.1 68416.m03024 KRR1 family protein contains Pfam PF051...    30   0.70 
At5g01430.1 68418.m00056 Got1-like family protein contains Pfam ...    27   6.5  
At3g49420.1 68416.m05402 Got1-like family protein contains Pfam ...    27   6.5  
At1g63450.1 68414.m07175 exostosin family protein contains Pfam ...    27   6.5  

>At5g10360.1 68418.m01202 40S ribosomal protein S6 (RPS6B)
          Length = 249

 Score = 60.5 bits (140), Expect = 6e-10
 Identities = 34/58 (58%), Positives = 40/58 (68%), Gaps = 2/58 (3%)
 Frame = -3

Query: 420 DGNVPRRLGPKRASKIRKLFNLSKEDDVRRYV--VKRVLPAKEGKENAKPRHKAPKIR 253
           D   PR  GPKRASKIRKLFNL KEDDVR+YV   +R    K+GK+ +    KAPKI+
Sbjct: 128 DTEKPRMRGPKRASKIRKLFNLGKEDDVRKYVNTYRRTFTNKKGKKVS----KAPKIQ 181



 Score = 38.7 bits (86), Expect = 0.002
 Identities = 38/127 (29%), Positives = 54/127 (42%), Gaps = 3/127 (2%)
 Frame = -2

Query: 472 LALVIVRKGAQEIPGLT*W---KCTPPSRSQTCFQNP*AVQP*QRR*CTSLCRQTRAPSQ 302
           L LVIV+KG  ++PGLT     +   P R+    +     +    R   +  R+T    +
Sbjct: 111 LNLVIVKKGVSDLPGLTDTEKPRMRGPKRASKIRKLFNLGKEDDVRKYVNTYRRTFTNKK 170

Query: 301 GRKRKC*TQT*GT*DPRLVTPVVLQXXXXXXXXXXXXXXXXKSSEAEYAKLLAQRKKESK 122
           G+K     +       RLVTP+ LQ                 S  A+Y KLLA R KE +
Sbjct: 171 GKKVSKAPKI-----QRLVTPLTLQRKRARIADKKKRIAKANSDAADYQKLLASRLKEQR 225

Query: 121 VRRQEEI 101
            RR E +
Sbjct: 226 DRRSESL 232


>At4g31700.1 68417.m04500 40S ribosomal protein S6 (RPS6A) ribosomal
           protein S6, Arabidopsis thaliana, PID:g2662469
          Length = 250

 Score = 60.1 bits (139), Expect = 8e-10
 Identities = 35/58 (60%), Positives = 39/58 (67%), Gaps = 2/58 (3%)
 Frame = -3

Query: 420 DGNVPRRLGPKRASKIRKLFNLSKEDDVRRYV--VKRVLPAKEGKENAKPRHKAPKIR 253
           D   PR  GPKRASKIRKLFNL KEDDVR YV   +R    K+GKE +    KAPKI+
Sbjct: 128 DTEKPRMRGPKRASKIRKLFNLKKEDDVRTYVNTYRRKFTNKKGKEVS----KAPKIQ 181



 Score = 35.9 bits (79), Expect = 0.014
 Identities = 20/51 (39%), Positives = 24/51 (47%)
 Frame = -2

Query: 253 RLVTPVVLQXXXXXXXXXXXXXXXXKSSEAEYAKLLAQRKKESKVRRQEEI 101
           RLVTP+ LQ                 S  A+Y KLLA R KE + RR E +
Sbjct: 182 RLVTPLTLQRKRARIADKKKKIAKANSDAADYQKLLASRLKEQRDRRSESL 232


>At3g24080.1 68416.m03024 KRR1 family protein contains Pfam PF05178:
           Krr1 family
          Length = 638

 Score = 30.3 bits (65), Expect = 0.70
 Identities = 17/50 (34%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
 Frame = -3

Query: 423 LDGNVPRRLGPKRASKIRKLFNLSKEDDVRRYVVKRV--LPAKEGKENAK 280
           ++G+V ++   ++A +  K   + KEDDVR+  +KR+  +  KE KE  K
Sbjct: 289 VEGSVRKKDNARKAQRKNKDERMKKEDDVRKEELKRLKNVKKKEIKEKMK 338


>At5g01430.1 68418.m00056 Got1-like family protein contains Pfam
           profile: PF04178 Got1-like family
          Length = 140

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
 Frame = +1

Query: 271 MSGFSIFFSFLGWEHAFDD---ITTYIIFFAKVEQLTDFGST 387
           ++GF +FFSFLG    FD        I+F + V     F ST
Sbjct: 16  LTGFGVFFSFLGIVFVFDKGLLAMGNILFISGVSLTIGFKST 57


>At3g49420.1 68416.m05402 Got1-like family protein contains Pfam
           profile: PF04178 Got1-like family
          Length = 140

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
 Frame = +1

Query: 271 MSGFSIFFSFLGWEHAFDD---ITTYIIFFAKVEQLTDFGST 387
           ++GF +FFSFLG    FD        I+F + V     F ST
Sbjct: 16  LTGFGVFFSFLGIVFVFDKGLLAMGNILFISGVSLTIGFKST 57


>At1g63450.1 68414.m07175 exostosin family protein contains Pfam
           profile: PF03016 exostosin family
          Length = 641

 Score = 27.1 bits (57), Expect = 6.5
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = -3

Query: 390 KRASKIRKLFN--LSKEDDVRRYVVKRVLPA-KEGKENAK 280
           KR + I KL +  L + +D+R Y+V  +LP    G  NAK
Sbjct: 579 KRVNVIEKLMSKTLREREDMRSYIVHELLPGLVYGDSNAK 618


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,180,657
Number of Sequences: 28952
Number of extensions: 156289
Number of successful extensions: 412
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 412
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 811731120
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)