Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0579.Seq
         (487 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592536-1|ABQ95982.1|  598|Tribolium castaneum beta-N-acetylglu...    23   1.1  
AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein pr...    23   1.1  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    23   1.1  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       22   2.6  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   7.9  

>EF592536-1|ABQ95982.1|  598|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG1 protein.
          Length = 598

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -1

Query: 367 ALEDAIEGEKTEQWRAQGQELLIQAKK 287
           AL + +  E T  WR   Q +L+Q ++
Sbjct: 541 ALGEVLWSEPTNTWREAEQRILVQRER 567


>AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein
           protein.
          Length = 136

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 14/38 (36%), Positives = 16/38 (42%)
 Frame = -2

Query: 246 AHVRLH*GEAASGLPAREVERGASSRPEAHGRLDSEQR 133
           AHVR H GE     P  +     SS    H R  S +R
Sbjct: 39  AHVRTHSGEKPFRCPVCDRRFSQSSSVTTHMRTHSGER 76


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 23.4 bits (48), Expect = 1.1
 Identities = 14/38 (36%), Positives = 16/38 (42%)
 Frame = -2

Query: 246 AHVRLH*GEAASGLPAREVERGASSRPEAHGRLDSEQR 133
           AHVR H GE     P  +     SS    H R  S +R
Sbjct: 295 AHVRTHSGEKPFRCPVCDRRFSQSSSVTTHMRTHSGER 332


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 218 RRLDYQLEKSNVERRLAQKHMVD 150
           RRL+  LEKS +      +H VD
Sbjct: 148 RRLEMSLEKSGLFSSKTSEHSVD 170


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 20.6 bits (41), Expect = 7.9
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -1

Query: 55  SERKRTLFMYRSVIKII 5
           S +K+T + YRSV  +I
Sbjct: 234 SSKKKTRYYYRSVDDVI 250


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,452
Number of Sequences: 336
Number of extensions: 1816
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11315916
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)