Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0579.Seq
(487 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac... 32 0.040
SPAC222.15 |meu13|SPAC821.01|Tat binding protein 1|Schizosacchar... 29 0.49
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 27 1.5
SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 27 1.5
SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyce... 26 3.5
SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 25 8.0
SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual 25 8.0
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac... 25 8.0
SPAC8C9.07 |||rRNA processing protein Fyv7 |Schizosaccharomyces ... 25 8.0
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 25 8.0
>SPCC736.14 |dis1||microtubule-associated protein Dis1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 882
Score = 32.3 bits (70), Expect = 0.040
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +3
Query: 48 RSLPGQRSQVRDAAVQRLLLLVRSDRLGHV 137
+ LP R +RDA+ Q LL+L +SD L +V
Sbjct: 99 KCLPSPRQSIRDASHQALLILAKSDALDYV 128
>SPAC222.15 |meu13|SPAC821.01|Tat binding protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 216
Score = 28.7 bits (61), Expect = 0.49
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = -1
Query: 466 SSREIRTKVAAWLDKEVEATENEWXEGRNQTVKAL 362
S EIR K+ + +DKE+E T ++ RN TVK +
Sbjct: 125 SPAEIREKIQS-IDKEIEETSSKLESLRNGTVKQI 158
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 27.1 bits (57), Expect = 1.5
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = -1
Query: 382 NQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLE 263
N + + ED++ E+ E+ Q + L +Q + ENV ++LE
Sbjct: 785 NTAILSFEDSLRRERDEKSTLQQKCLNLQYEYENVRIELE 824
>SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 198
Score = 27.1 bits (57), Expect = 1.5
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = -1
Query: 424 KEVEATENEWXEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKEN 281
K E E EW + +N+ E+A+E E T Q Q+LL + +EN
Sbjct: 85 KNKELIEEEWNDFQNEIGIIEENAVEQEIT----LQQQQLLAEKDEEN 128
>SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 578
Score = 25.8 bits (54), Expect = 3.5
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -1
Query: 418 VEATENEWXEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQ 296
V+ T + E QTV+ L +IEG W A ++L+ +
Sbjct: 150 VDHTHDPSDESIKQTVQRLRSSIEGLDEAFWEAPQRQLICE 190
>SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 24.6 bits (51), Expect = 8.0
Identities = 16/56 (28%), Positives = 25/56 (44%)
Frame = -3
Query: 293 QEGERAPAARGRLRERLMYAYTEVKRRLDYQLEKSNVERRLAQKHMVDWIVSNVTK 126
+E E+ + RE+L E +RR + E ERRL + + + N TK
Sbjct: 695 EEEEKRILEERKRREKLDKEEEERRRRELLEKESEEKERRLREAKIAAFFAPNQTK 750
>SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 433
Score = 24.6 bits (51), Expect = 8.0
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +1
Query: 88 RSSACFSWSGVIALVTLLT 144
+ S C++W+G+ AL T T
Sbjct: 311 KKSNCYNWNGIAALETYTT 329
>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
Smc6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1140
Score = 24.6 bits (51), Expect = 8.0
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = -1
Query: 436 AWLDKEVEATENEWXEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLE 263
A LD E+E + + E RN+T ++E A E + + ++L+ A+ +L LE
Sbjct: 913 AELDNEIERLQMQIAEWRNRTGVSVEQAAEDYLNAKEKHDQAKVLV-ARLTQLLQALE 969
>SPAC8C9.07 |||rRNA processing protein Fyv7 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 144
Score = 24.6 bits (51), Expect = 8.0
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = -3
Query: 290 EGERAPAARGRLRERLMYAYTEVKRRLDYQLEKSNVERRL 171
E +R + + L+E +Y +E KRR+ + E + V++RL
Sbjct: 65 ERKRKFSKKSHLQE--LYERSEEKRRIQQEKEDAKVQKRL 102
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 24.6 bits (51), Expect = 8.0
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Frame = -3
Query: 164 KHMVDWI-VSNVTKAITP-DQEKQALDRCIADLASLA 60
++ + W+ + N T AI+ + + +DRC+ LASLA
Sbjct: 433 RNSICWLWIKNPTHAISRVEAQGVCVDRCLFQLASLA 469
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,697,898
Number of Sequences: 5004
Number of extensions: 28000
Number of successful extensions: 118
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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