Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0579.Seq
(487 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_03_0227 + 16601538-16601908,16603197-16603378,16603495-166035... 36 0.013
02_01_0622 - 4658133-4658150,4658269-4658337,4658436-4658462,465... 36 0.023
04_03_0501 + 16593710-16593886,16595255-16595311,16595748-165974... 31 0.37
09_03_0165 + 12936028-12936398,12936807-12936810 30 0.86
08_02_1127 + 24496838-24497590 30 1.1
01_01_0450 - 3344203-3344259,3344339-3344506,3344743-3344956,334... 30 1.1
10_08_0234 - 16067579-16068157 29 2.0
07_03_0851 + 22012836-22014017,22016668-22016734,22016774-220168... 29 2.6
03_05_0761 - 27515441-27515650,27515967-27516074,27516666-275168... 29 2.6
02_05_0968 + 33156585-33156941,33158510-33159902,33160035-331601... 29 2.6
01_07_0260 - 42364769-42364777,42364884-42365354 29 2.6
02_03_0107 - 15303890-15304060,15304158-15304248,15304505-153046... 28 3.5
09_04_0197 - 15522167-15523524,15525416-15525683 28 4.6
07_03_1257 - 25241194-25242018 28 4.6
06_03_0324 - 19591267-19592097,19592266-19592583,19592827-19593108 28 4.6
08_02_1210 + 25314569-25314596,25315271-25315455,25315539-253156... 27 6.0
07_03_0544 + 19309026-19310105 27 6.0
03_06_0603 + 34999083-34999703,35000092-35000177,35000400-350007... 27 6.0
01_06_0597 - 30505800-30506021,30506135-30506566,30506673-30506819 27 6.0
01_05_0596 + 23511148-23512650 27 6.0
01_01_1084 - 8521796-8522389,8522503-8522983,8523084-8523190 27 6.0
11_01_0278 - 2068800-2068826,2070001-2070442,2070702-2072047 27 8.0
09_03_0089 + 12265916-12267232 27 8.0
05_06_0125 - 25828093-25828911,25830398-25830530,25830644-25831062 27 8.0
05_01_0523 - 4520040-4520058,4520201-4520562 27 8.0
04_04_1188 + 31579833-31579914,31580001-31580176,31580822-315809... 27 8.0
01_06_0237 + 27770777-27771120,27771209-27771438,27771951-277720... 27 8.0
>02_03_0227 +
16601538-16601908,16603197-16603378,16603495-16603577,
16604609-16604717,16606754-16606806,16606988-16607023
Length = 277
Score = 36.3 bits (80), Expect = 0.013
Identities = 27/71 (38%), Positives = 30/71 (42%)
Frame = -2
Query: 252 GEAHVRLH*GEAASGLPAREVERGASSRPEAHGRLDSEQRDQGDHSGPGEAGAGPLHRGP 73
G V G G PA E RGA+ R EA R +R G G G AG G G
Sbjct: 2 GAPAVEARRGTVKMGAPAVEARRGAAKRWEARRR--RGRRGDGGAGGGGAAGRGE-DGGA 58
Query: 72 GFAGQEVNGSE 40
G G+ V G E
Sbjct: 59 GGGGESVCGEE 69
>02_01_0622 -
4658133-4658150,4658269-4658337,4658436-4658462,
4658808-4658873,4658954-4659076,4659562-4659629,
4659703-4659766,4659994-4660135,4660218-4660306,
4660574-4660637,4660870-4661021,4661124-4661261,
4661742-4661867,4661971-4662183,4662343-4662426,
4662583-4662742,4662993-4663126,4664047-4664136,
4664313-4664471,4665528-4665611,4666170-4666289,
4666338-4666391,4666899-4666945,4667556-4667598,
4667730-4668586,4668845-4668899
Length = 1081
Score = 35.5 bits (78), Expect = 0.023
Identities = 22/72 (30%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
Frame = -3
Query: 281 RAPAARGRLRERLMYAYTEVKRRLDYQLEKSNVERRLAQKHMVDWIVSNVTKAITPDQE- 105
+APA + RL +R+ R L + +RRL M +++ IT D+E
Sbjct: 221 KAPAVKNRLAKRVRQKIITATSRRSVPLPSNMKKRRLLIDQMKTYVLMKKLGIITKDEEV 280
Query: 104 -KQALDRCIADL 72
+ +DRCIA L
Sbjct: 281 DEDTMDRCIAFL 292
>04_03_0501 + 16593710-16593886,16595255-16595311,16595748-16597469,
16599045-16599326,16599521-16599637,16599655-16600365
Length = 1021
Score = 31.5 bits (68), Expect = 0.37
Identities = 13/49 (26%), Positives = 25/49 (51%)
Frame = -2
Query: 201 AREVERGASSRPEAHGRLDSEQRDQGDHSGPGEAGAGPLHRGPGFAGQE 55
AR+++R A +++ +Q D + + G+ GP+ GPG G +
Sbjct: 899 ARKMDRAADEEAAGSKQVNEDQMDVDNSNADGDEFVGPIPPGPGTQGDD 947
>09_03_0165 + 12936028-12936398,12936807-12936810
Length = 124
Score = 30.3 bits (65), Expect = 0.86
Identities = 18/64 (28%), Positives = 26/64 (40%), Gaps = 5/64 (7%)
Frame = -2
Query: 216 ASGLPAREVERGASSRPEAHG-----RLDSEQRDQGDHSGPGEAGAGPLHRGPGFAGQEV 52
+ G PA+ +++G H R + E R G G G RG GF +E
Sbjct: 55 SQGAPAQRLDQGQVGEGGRHAQCRLHRQEEESRGGSSMKGGGRQGGSSRTRGGGFEEREA 114
Query: 51 NGSE 40
GS+
Sbjct: 115 QGSQ 118
>08_02_1127 + 24496838-24497590
Length = 250
Score = 29.9 bits (64), Expect = 1.1
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +2
Query: 128 WSRCSLSSRPCASGRDDAPRSTSRA 202
WSR S S RPC+SG R+ +RA
Sbjct: 156 WSRPSRSRRPCSSGSAPGVRTATRA 180
>01_01_0450 -
3344203-3344259,3344339-3344506,3344743-3344956,
3345039-3345101,3345582-3345769,3345846-3346029,
3346535-3346606,3346676-3346787,3346878-3346953,
3347050-3347100,3347179-3347260,3347331-3347567,
3347650-3347772,3348141-3348326,3348680-3349625,
3350426-3350551,3350683-3350811,3350918-3351049,
3351167-3351301,3351450-3351575,3352080-3352148,
3352149-3352205,3352302-3352436,3352600-3352704,
3352841-3352906,3353333-3353503,3353806-3353983
Length = 1395
Score = 29.9 bits (64), Expect = 1.1
Identities = 19/59 (32%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
Frame = -2
Query: 198 REVERGASSRPEAHGRLDSEQRDQGDHSGPGEAGAGPLHRG-PGFAGQEVNGSERYLCI 25
R + +SR +AH L+ E+ + ++ GEA A LH G FA Q N S + + +
Sbjct: 367 RSITASENSRKKAHVVLEGEEPVKNVNNDTGEAIAPMLHAGMQKFAPQNRNSSHKAITL 425
>10_08_0234 - 16067579-16068157
Length = 192
Score = 29.1 bits (62), Expect = 2.0
Identities = 13/47 (27%), Positives = 20/47 (42%)
Frame = -2
Query: 183 GASSRPEAHGRLDSEQRDQGDHSGPGEAGAGPLHRGPGFAGQEVNGS 43
G +A G S G +G G + A + GP +A + NG+
Sbjct: 119 GGGGGGQAGGNWGSSGSGDGSGAGSGSSSANTYYGGPSYANADANGN 165
>07_03_0851 +
22012836-22014017,22016668-22016734,22016774-22016868,
22017304-22017717
Length = 585
Score = 28.7 bits (61), Expect = 2.6
Identities = 14/40 (35%), Positives = 19/40 (47%)
Frame = -2
Query: 210 GLPAREVERGASSRPEAHGRLDSEQRDQGDHSGPGEAGAG 91
GL A EV+ R G + +E+ GD S G+ G G
Sbjct: 517 GLEAAEVDEPEEERRVVDGAVAAEEVAAGDESAEGDVGGG 556
>03_05_0761 -
27515441-27515650,27515967-27516074,27516666-27516839,
27517185-27517469,27517688-27517920,27519422-27520139
Length = 575
Score = 28.7 bits (61), Expect = 2.6
Identities = 17/44 (38%), Positives = 22/44 (50%)
Frame = +1
Query: 295 PG*GAPVPARATAPSSLPQLRPPVLSRFGSDLRSIRSRSLQLPC 426
PG AP PA P P PP ++ G++LR +L LPC
Sbjct: 111 PG-AAPPPAVGGGPDPSPPRCPPFVALSGAELRG-AGDALALPC 152
>02_05_0968 +
33156585-33156941,33158510-33159902,33160035-33160118,
33160216-33160265
Length = 627
Score = 28.7 bits (61), Expect = 2.6
Identities = 23/71 (32%), Positives = 32/71 (45%)
Frame = -3
Query: 374 RESTGGRN*GREDGAVARAGTGAPHPGQEGERAPAARGRLRERLMYAYTEVKRRLDYQLE 195
R G G +DGA AR G G +EG+ G +R R AYT +RR + E
Sbjct: 16 RAERSGAPRGDDDGADARGGGGEEEEEEEGD---GDGGDVRGRRYEAYT--RRRDERLRE 70
Query: 194 KSNVERRLAQK 162
+ R+ +K
Sbjct: 71 REGWRARMERK 81
>01_07_0260 - 42364769-42364777,42364884-42365354
Length = 159
Score = 28.7 bits (61), Expect = 2.6
Identities = 12/22 (54%), Positives = 15/22 (68%)
Frame = -3
Query: 332 AVARAGTGAPHPGQEGERAPAA 267
A+A G GA G+EGE+ PAA
Sbjct: 132 AIAGCGAGAVDAGEEGEKRPAA 153
>02_03_0107 -
15303890-15304060,15304158-15304248,15304505-15304614,
15304715-15304784,15306365-15306558
Length = 211
Score = 28.3 bits (60), Expect = 3.5
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = -3
Query: 374 RESTGGRN*GREDGAVARAGTGAPHPGQEGERAPAARGRLRER 246
R+ST GR+ G DG + A A H G+ AAR R +
Sbjct: 28 RQSTRGRSTGSGDGEESEALAAAVHAGKISREDAAARRMARTK 70
>09_04_0197 - 15522167-15523524,15525416-15525683
Length = 541
Score = 27.9 bits (59), Expect = 4.6
Identities = 10/20 (50%), Positives = 16/20 (80%)
Frame = -2
Query: 432 GWTRKLKRPRTNGXKVGTKP 373
G++++L RPR+NG + TKP
Sbjct: 416 GFSQRLTRPRSNGTYLSTKP 435
>07_03_1257 - 25241194-25242018
Length = 274
Score = 27.9 bits (59), Expect = 4.6
Identities = 17/41 (41%), Positives = 23/41 (56%)
Frame = +1
Query: 307 APVPARATAPSSLPQLRPPVLSRFGSDLRSIRSRSLQLPCP 429
A PA + +PSS P L+P S +++R RSLQ P P
Sbjct: 15 AECPATSPSPSSPPPLQPRPRSPRPMP-QAVRHRSLQPPAP 54
>06_03_0324 - 19591267-19592097,19592266-19592583,19592827-19593108
Length = 476
Score = 27.9 bits (59), Expect = 4.6
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = -2
Query: 240 VRLH*GEAASGLPAREVERGASSRPEAHGRLDSEQRDQ-GDHSGPGEAG 97
V ++ GE GLP V GA S+ +A GR++ + S P AG
Sbjct: 177 VSVNEGEEVLGLPRLVVPAGADSKRQADGRVNRVYTGELPSQSNPSRAG 225
>08_02_1210 +
25314569-25314596,25315271-25315455,25315539-25315648,
25315756-25315909,25316213-25316237,25316566-25316756,
25316837-25316899,25317012-25317075,25318078-25318109
Length = 283
Score = 27.5 bits (58), Expect = 6.0
Identities = 17/54 (31%), Positives = 25/54 (46%)
Frame = -1
Query: 430 LDKEVEATENEWXEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQ 269
+D+E+ E + G + K DAI EK +EL I K+ VLL+
Sbjct: 43 VDREIRQIEQQAYTGVLRAFKVQSDAITWEKESLITELRKELQISDKEHRVLLK 96
>07_03_0544 + 19309026-19310105
Length = 359
Score = 27.5 bits (58), Expect = 6.0
Identities = 13/25 (52%), Positives = 13/25 (52%)
Frame = -3
Query: 347 GREDGAVARAGTGAPHPGQEGERAP 273
G GA A AG GAP P E R P
Sbjct: 28 GGGGGAAAAAGAGAPDPRAEALRCP 52
>03_06_0603 +
34999083-34999703,35000092-35000177,35000400-35000796,
35000906-35001154,35001522-35001749,35002524-35002973,
35003848-35003961,35004171-35004216,35004408-35004574
Length = 785
Score = 27.5 bits (58), Expect = 6.0
Identities = 10/25 (40%), Positives = 17/25 (68%)
Frame = +1
Query: 379 GSDLRSIRSRSLQLPCPTKRQLWSE 453
G +L +R RS ++PCP + ++W E
Sbjct: 157 GGNLCVVRQRSGRIPCPHQGRVWLE 181
>01_06_0597 - 30505800-30506021,30506135-30506566,30506673-30506819
Length = 266
Score = 27.5 bits (58), Expect = 6.0
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = -1
Query: 397 WXEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQ 296
W G T A+ E E+T++W A E +Q
Sbjct: 28 WRHGAPPTYDAVNSLFEAERTQEWPAGSLEETVQ 61
>01_05_0596 + 23511148-23512650
Length = 500
Score = 27.5 bits (58), Expect = 6.0
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Frame = +2
Query: 128 WSRCSLSSRPC--ASGRDDAPRSTSRAGSPDAASPQCRR 238
W +C+ R C SG+ PR++ G+ D A+P CRR
Sbjct: 172 WLQCA-PCRRCYDQSGQMFDPRASHSYGAVDCAAPLCRR 209
>01_01_1084 - 8521796-8522389,8522503-8522983,8523084-8523190
Length = 393
Score = 27.5 bits (58), Expect = 6.0
Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
Frame = -2
Query: 225 GEAASGLPAREVERGASSRPEAHGRLDSEQRDQG----DHSGPGEAGAGPL--HRGPGFA 64
GE A L A R +SS + G +E G DH GEAGA H G G
Sbjct: 23 GEVADFLLADSSPRRSSSAAKETGLDGTEGTHDGGAAGDHGEAGEAGAAAARGHGGGGEV 82
Query: 63 GQEVNGSE 40
G + +G++
Sbjct: 83 GPDGDGAD 90
>11_01_0278 - 2068800-2068826,2070001-2070442,2070702-2072047
Length = 604
Score = 27.1 bits (57), Expect = 8.0
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = -3
Query: 371 ESTGGRN*GREDGAVARAGTGAPHPGQEGERAPAARGRLRER 246
ES G + R + A +R T P PG GER+ AA + R
Sbjct: 466 ESAGSDSPCRREEAKSR--TPRPQPGSAGERSAAASAEMSSR 505
>09_03_0089 + 12265916-12267232
Length = 438
Score = 27.1 bits (57), Expect = 8.0
Identities = 16/42 (38%), Positives = 21/42 (50%)
Frame = -2
Query: 216 ASGLPAREVERGASSRPEAHGRLDSEQRDQGDHSGPGEAGAG 91
A+G P+ R A+ A +Q+ QGD S G AGAG
Sbjct: 85 AAGAPSSSSPRVAADAGVAGAHQQQQQQQQGDPSSEG-AGAG 125
>05_06_0125 - 25828093-25828911,25830398-25830530,25830644-25831062
Length = 456
Score = 27.1 bits (57), Expect = 8.0
Identities = 14/29 (48%), Positives = 15/29 (51%)
Frame = -3
Query: 338 DGAVARAGTGAPHPGQEGERAPAARGRLR 252
DG AG G P PG E PA RG +R
Sbjct: 33 DGGGGEAGDGGPDPGTP-EADPAPRGWIR 60
>05_01_0523 - 4520040-4520058,4520201-4520562
Length = 126
Score = 27.1 bits (57), Expect = 8.0
Identities = 15/34 (44%), Positives = 18/34 (52%)
Frame = -2
Query: 186 RGASSRPEAHGRLDSEQRDQGDHSGPGEAGAGPL 85
R SS GRL SE ++Q D G+A AG L
Sbjct: 15 RSGSSGLVWDGRLMSEDQNQSDQRATGDAEAGSL 48
>04_04_1188 +
31579833-31579914,31580001-31580176,31580822-31580923,
31581015-31581245,31581821-31581922,31582092-31582184,
31582275-31582379,31582455-31582514,31582621-31582698,
31582778-31582924,31583011-31583109,31583178-31583267,
31583360-31583451,31583529-31583646,31583783-31583871,
31583998-31584088,31584203-31584294,31584442-31584749,
31584866-31584897
Length = 728
Score = 27.1 bits (57), Expect = 8.0
Identities = 14/39 (35%), Positives = 16/39 (41%)
Frame = -3
Query: 377 NRESTGGRN*GREDGAVARAGTGAPHPGQEGERAPAARG 261
N GGR GR DG+ R G G+R RG
Sbjct: 668 NSSGRGGRRGGRGDGSRGRGDRGRGRGFGRGDRGHGGRG 706
>01_06_0237 +
27770777-27771120,27771209-27771438,27771951-27772092,
27772266-27772281
Length = 243
Score = 27.1 bits (57), Expect = 8.0
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +2
Query: 131 SRCSLSSRPCASGRDDAPRSTSRAGSPDAASPQ 229
S S SS P G PR T R G P + SP+
Sbjct: 23 SSSSCSSSPNPGGEARGPRLTLRLGLPGSESPE 55
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,366,393
Number of Sequences: 37544
Number of extensions: 240483
Number of successful extensions: 1452
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 1387
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1450
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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