Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0579.Seq
(487 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_24914| Best HMM Match : Nuc_sug_transp (HMM E-Value=3.6e-15) 33 0.12
SB_31305| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.67
SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.67
SB_30771| Best HMM Match : WD40 (HMM E-Value=2e-06) 30 0.88
SB_6600| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.88
SB_59727| Best HMM Match : C2 (HMM E-Value=0.0018) 29 1.5
SB_55341| Best HMM Match : Mt_ATP-synt_B (HMM E-Value=0.0013) 29 2.0
SB_41985| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_26664| Best HMM Match : I-set (HMM E-Value=7.6e-06) 29 2.0
SB_47891| Best HMM Match : RVT_1 (HMM E-Value=1.3e-09) 28 3.6
SB_40213| Best HMM Match : Pkinase_Tyr (HMM E-Value=1.1e-07) 28 3.6
SB_40551| Best HMM Match : Extensin_2 (HMM E-Value=0.076) 28 4.7
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20) 28 4.7
SB_29523| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.7
SB_24257| Best HMM Match : DUF583 (HMM E-Value=0.16) 28 4.7
SB_35820| Best HMM Match : TRAP_240kDa (HMM E-Value=0.006) 27 6.2
SB_22350| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.2
SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.2
SB_10797| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.2
SB_9868| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.2
SB_45928| Best HMM Match : Uso1_p115_C (HMM E-Value=0.54) 27 8.2
SB_36009| Best HMM Match : Collagen (HMM E-Value=0) 27 8.2
SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.2
SB_5034| Best HMM Match : Extensin_2 (HMM E-Value=0.0055) 27 8.2
SB_31640| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.2
SB_22765| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.2
SB_18590| Best HMM Match : FYVE (HMM E-Value=8.8e-29) 27 8.2
SB_12446| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.2
>SB_24914| Best HMM Match : Nuc_sug_transp (HMM E-Value=3.6e-15)
Length = 979
Score = 33.1 bits (72), Expect = 0.12
Identities = 23/64 (35%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Frame = -2
Query: 225 GEAASGLPAREVERGASSRPEAHGRLD--SEQRDQGDHSGPGEAGAGPLHRGPGFAGQEV 52
GEA A E + + EA G SE + G+ S GEAG G AG+ V
Sbjct: 676 GEAIEAGEAGEASEASEAAGEATGEAGEASEASEAGEASEAGEAGEAGEASEAGVAGEAV 735
Query: 51 NGSE 40
GSE
Sbjct: 736 EGSE 739
>SB_31305| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 313
Score = 30.7 bits (66), Expect = 0.67
Identities = 20/62 (32%), Positives = 26/62 (41%)
Frame = -3
Query: 347 GREDGAVARAGTGAPHPGQEGERAPAARGRLRERLMYAYTEVKRRLDYQLEKSNVERRLA 168
G E AGT A H G G APA G R+ E R + E+ N+ R+
Sbjct: 205 GYEQKTPESAGTSARHSGASGREAPAEAGGEGRRMREEALEEAR---LKAERDNLNRQFE 261
Query: 167 QK 162
Q+
Sbjct: 262 QE 263
>SB_13021| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 964
Score = 30.7 bits (66), Expect = 0.67
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = -2
Query: 183 GASSRPEAHGRLDSEQRDQGDHSG--PGEAGAGPLHRGPG 70
G+SS P GR + R + H+G PG +G+GP +G G
Sbjct: 234 GSSSGPNGAGRGPAHSRRRQIHNGGIPGTSGSGPRAQGMG 273
>SB_30771| Best HMM Match : WD40 (HMM E-Value=2e-06)
Length = 229
Score = 30.3 bits (65), Expect = 0.88
Identities = 19/38 (50%), Positives = 22/38 (57%), Gaps = 3/38 (7%)
Frame = +1
Query: 310 PVPARATAPSSLPQLRPPV---LSRFGSDLRSIRSRSL 414
PV AT SSLP +RPPV LS S+L + R R L
Sbjct: 43 PVMCSATPASSLPGIRPPVIAPLSTLKSNLSTNRIRDL 80
>SB_6600| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 245
Score = 30.3 bits (65), Expect = 0.88
Identities = 15/51 (29%), Positives = 26/51 (50%)
Frame = -1
Query: 466 SSREIRTKVAAWLDKEVEATENEWXEGRNQTVKALEDAIEGEKTEQWRAQG 314
+ +E+ T+ +KEVE + E +T K +E E E + +WR +G
Sbjct: 29 TEKEVETEKEVETEKEVETEKEVETEKEVETKKEVETEKEVEGSRKWRREG 79
>SB_59727| Best HMM Match : C2 (HMM E-Value=0.0018)
Length = 482
Score = 29.5 bits (63), Expect = 1.5
Identities = 17/65 (26%), Positives = 29/65 (44%)
Frame = -3
Query: 251 ERLMYAYTEVKRRLDYQLEKSNVERRLAQKHMVDWIVSNVTKAITPDQEKQALDRCIADL 72
E M+A +V ++ +EKS A + W VS P+ E +D + D+
Sbjct: 281 EATMFALEDVIQKYSNSIEKSMGTGASAARRQ--WAVSEEENTAAPNAEAANVDSAVRDM 338
Query: 71 ASLAR 57
A +A+
Sbjct: 339 AGMAK 343
>SB_55341| Best HMM Match : Mt_ATP-synt_B (HMM E-Value=0.0013)
Length = 185
Score = 29.1 bits (62), Expect = 2.0
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = -1
Query: 442 VAAWLDKEVEATENEWXEGRNQTVKALEDAIEGEK 338
+A LD + + + GRN ++K L+DAI+ EK
Sbjct: 117 IAEMLDNTSQEILDAFNVGRNASIKHLQDAIDNEK 151
>SB_41985| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 472
Score = 29.1 bits (62), Expect = 2.0
Identities = 15/59 (25%), Positives = 27/59 (45%)
Frame = -3
Query: 260 RLRERLMYAYTEVKRRLDYQLEKSNVERRLAQKHMVDWIVSNVTKAITPDQEKQALDRC 84
+LR + A E + LD + + +++ + DW+ SN TK + + Q D C
Sbjct: 352 KLRTEYLKATEEERALLDQRYGRDRLKKVFEEVVSEDWVKSNCTKCPSCSYQIQKFDGC 410
>SB_26664| Best HMM Match : I-set (HMM E-Value=7.6e-06)
Length = 434
Score = 29.1 bits (62), Expect = 2.0
Identities = 12/24 (50%), Positives = 14/24 (58%)
Frame = -2
Query: 132 DQGDHSGPGEAGAGPLHRGPGFAG 61
D+GD PGE G+ P P FAG
Sbjct: 205 DKGDRGKPGETGSAPPRMKPIFAG 228
>SB_47891| Best HMM Match : RVT_1 (HMM E-Value=1.3e-09)
Length = 969
Score = 28.3 bits (60), Expect = 3.6
Identities = 21/63 (33%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = -3
Query: 362 GGRN*GRED-GAVARAGTGAPHPGQEGERAPAARGRLRERLMYAYTEVKRRLDYQLEKSN 186
GG N GR + A A A + + +RAP RGR R R T LD Q +
Sbjct: 18 GGPNRGRTNRDAAADAPVREMNITPQEDRAPQVRGRKRARTRITQTNDSNVLDIQSNNTP 77
Query: 185 VER 177
E+
Sbjct: 78 QEK 80
>SB_40213| Best HMM Match : Pkinase_Tyr (HMM E-Value=1.1e-07)
Length = 750
Score = 28.3 bits (60), Expect = 3.6
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = -1
Query: 358 DAIEGEKTEQWRAQGQELLIQAKKENVL 275
D + + +QW EL ++ KKENVL
Sbjct: 238 DVVLADLDQQWMLDSAELCLEEKKENVL 265
>SB_40551| Best HMM Match : Extensin_2 (HMM E-Value=0.076)
Length = 1269
Score = 27.9 bits (59), Expect = 4.7
Identities = 13/48 (27%), Positives = 20/48 (41%)
Frame = -2
Query: 189 ERGASSRPEAHGRLDSEQRDQGDHSGPGEAGAGPLHRGPGFAGQEVNG 46
++G R + GR D D+G + P + A RGP + G
Sbjct: 155 KQGQDERGQEAGRRDQGGEDRGTYRKPDQGRADRTERGPPYVSSRGGG 202
>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
Length = 3489
Score = 27.9 bits (59), Expect = 4.7
Identities = 18/65 (27%), Positives = 32/65 (49%)
Frame = -1
Query: 463 SREIRTKVAAWLDKEVEATENEWXEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKE 284
S+E+ ++ +KEVE E + + KALE A G+K E+ + + ++ +E
Sbjct: 2178 SKELEEELNTKSEKEVEMLSRV-NELQEELAKALESAEAGKKAEKQLKEQESEHVELSRE 2236
Query: 283 NVLLQ 269
LQ
Sbjct: 2237 KEALQ 2241
>SB_29523| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 502
Score = 27.9 bits (59), Expect = 4.7
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +3
Query: 54 LPGQRSQVRDAAVQRLLLLVRSDRLGHVAHYPVDHVLLGETTLHVRLLELVV 209
+ G S ++A + + + V L HV H P D V +G+ L + L L+V
Sbjct: 130 IDGDTSGRQEAGLADVAIEVLHRLLSHVIHGPHDQVGVGDDQLSILFLLLIV 181
>SB_24257| Best HMM Match : DUF583 (HMM E-Value=0.16)
Length = 3999
Score = 27.9 bits (59), Expect = 4.7
Identities = 17/58 (29%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Frame = +1
Query: 307 APVPARATAPSSLPQLRPPVLSRF---GSDLRSIRSRSLQLPCPTKRQLWSEFHVSYI 471
A +P AT +++ Q P + ++ G + ++ S +L PC T R +W + +VSY+
Sbjct: 1889 AGIPVSATH-NNIRQKGPSLGRKYCPHGYETIALASPTLYNPCGTGRHMWWKSNVSYV 1945
>SB_35820| Best HMM Match : TRAP_240kDa (HMM E-Value=0.006)
Length = 1382
Score = 27.5 bits (58), Expect = 6.2
Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Frame = +1
Query: 328 TAPSSLPQLRPP--VLSRFGSDLRSIRSRSLQLPCPTKRQ 441
TAP LP+ +PP V S FG R I S + LP P ++Q
Sbjct: 327 TAPKPLPRPKPPTQVRSSFGIG-RPIPSPNHPLPSPQQQQ 365
>SB_22350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1967
Score = 27.5 bits (58), Expect = 6.2
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = -1
Query: 460 REIRTKVAAWLDKEVEATENEWXEGRNQTVKALED 356
++IR +V A + +++ ENE+ E +TVK +E+
Sbjct: 545 KKIREEVCAEMAEQLVTIENEFSERVQETVKVVEE 579
>SB_33497| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1308
Score = 27.5 bits (58), Expect = 6.2
Identities = 18/48 (37%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = -2
Query: 204 PAREVERGASSRPE-AHGRLDSEQRDQGDHSGPGEAGAGPLHRGPGFA 64
P+ RG + P AHGR S +G SGP A P H+ G A
Sbjct: 693 PSINSPRGRAESPSNAHGRASSPSGTRGPVSGPSGARGSP-HQPRGRA 739
>SB_10797| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 754
Score = 27.5 bits (58), Expect = 6.2
Identities = 15/54 (27%), Positives = 27/54 (50%)
Frame = -3
Query: 236 AYTEVKRRLDYQLEKSNVERRLAQKHMVDWIVSNVTKAITPDQEKQALDRCIAD 75
A +VKRR D + ++ R + + +W T A P Q +++ +RCI +
Sbjct: 423 ASKDVKRRSDQLVNLASSARHVG---ISEWFARKRTLAGLPPQSRRSFERCITN 473
>SB_9868| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 471
Score = 27.5 bits (58), Expect = 6.2
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Frame = +1
Query: 325 ATAPSSLPQL-RPPVLSRFGSDLRSIRSRSLQLPCP 429
A+APS QL RPP ++ S S RSR L+ P P
Sbjct: 361 ASAPSERKQLIRPPKSAQSTSSAMSRRSRKLRNPRP 396
>SB_45928| Best HMM Match : Uso1_p115_C (HMM E-Value=0.54)
Length = 500
Score = 27.1 bits (57), Expect = 8.2
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 396 HSFSVASTSLSNQAATLVRISRELHT 473
HSF AS SLS A + +++E+H+
Sbjct: 220 HSFDEASRSLSTDMAAVKNLNQEIHS 245
>SB_36009| Best HMM Match : Collagen (HMM E-Value=0)
Length = 687
Score = 27.1 bits (57), Expect = 8.2
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = -2
Query: 186 RGASSRPEAHGRLDSEQRDQGDHSGPGEAGAGPLHRGPGFAG 61
+G + P + G L ++ DQG PG GA L PG G
Sbjct: 375 QGRAGAPGSPG-LGGQKGDQGMPGKPGNPGAAGLRGAPGARG 415
>SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2672
Score = 27.1 bits (57), Expect = 8.2
Identities = 21/58 (36%), Positives = 35/58 (60%), Gaps = 2/58 (3%)
Frame = -1
Query: 430 LDKEVEATENEWXEGRNQTVKALEDAIEGEKTEQWRAQ--GQELLIQAKKENVLLQLE 263
L++E+E+ + E E R + VKA E E+ EQ++A+ ++ IQA EN L Q++
Sbjct: 1543 LEEEIESKDAEAEEERTRIVKAAE-GFALEREEQFKAELADKDDCIQA-TENELNQVK 1598
>SB_5034| Best HMM Match : Extensin_2 (HMM E-Value=0.0055)
Length = 695
Score = 27.1 bits (57), Expect = 8.2
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Frame = +1
Query: 298 G*GAPVPARATAPSSLPQLRPPVLSRFGSDLR-SIRSRSLQLPCP 429
G G P+P + A P+ RPP S+ + L S+++ + LP P
Sbjct: 326 GGGPPLPPKRVANIPSPKPRPPRASKIAAPLAPSLQAVCIDLPEP 370
>SB_31640| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3003
Score = 27.1 bits (57), Expect = 8.2
Identities = 15/57 (26%), Positives = 22/57 (38%)
Frame = -2
Query: 210 GLPAREVERGASSRPEAHGRLDSEQRDQGDHSGPGEAGAGPLHRGPGFAGQEVNGSE 40
G +E E PE G +D+ SGPGE + + P NG++
Sbjct: 1040 GGATQEEEDDDEDDPEREGERSDSGQDEPAPSGPGEGASAEQQQQPPSQQPPANGND 1096
>SB_22765| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1387
Score = 27.1 bits (57), Expect = 8.2
Identities = 11/30 (36%), Positives = 15/30 (50%)
Frame = -2
Query: 204 PAREVERGASSRPEAHGRLDSEQRDQGDHS 115
P AS+ PE HG+ D QG+H+
Sbjct: 896 PTGHANHDASTSPEHHGKQDEPISHQGNHT 925
>SB_18590| Best HMM Match : FYVE (HMM E-Value=8.8e-29)
Length = 551
Score = 27.1 bits (57), Expect = 8.2
Identities = 13/59 (22%), Positives = 28/59 (47%)
Frame = -3
Query: 251 ERLMYAYTEVKRRLDYQLEKSNVERRLAQKHMVDWIVSNVTKAITPDQEKQALDRCIAD 75
+R+ E + +L + ++ RL + + +V T D+ ++ L+RC+AD
Sbjct: 247 KRVQMLLKEETAAMQTKLPRMKIKLRLCSESVSCLLVLEATVQSNLDERRKLLERCVAD 305
>SB_12446| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 615
Score = 27.1 bits (57), Expect = 8.2
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = -1
Query: 406 ENEWXEGRNQTVKALEDAIEGEKTEQ 329
EN E + + +EDA+EGEK E+
Sbjct: 242 ENHVEENKPTEAEKIEDAVEGEKKEE 267
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,502,752
Number of Sequences: 59808
Number of extensions: 240734
Number of successful extensions: 1316
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1313
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1026164244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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