Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0579.Seq
(487 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z78066-9|CAN86643.1| 2488|Caenorhabditis elegans Hypothetical pr... 30 0.77
Z78066-7|CAE48544.1| 570|Caenorhabditis elegans Hypothetical pr... 30 0.77
Z78066-6|CAB51467.1| 2484|Caenorhabditis elegans Hypothetical pr... 30 0.77
Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical pr... 30 0.77
U55373-5|AAC25888.1| 289|Caenorhabditis elegans Collagen protei... 30 1.0
U53340-6|AAA96210.1| 305|Caenorhabditis elegans Atp synthase b ... 29 1.4
U23179-7|AAC46721.1| 782|Caenorhabditis elegans Hypothetical pr... 29 1.4
Z46242-8|CAA86329.1| 301|Caenorhabditis elegans Hypothetical pr... 29 1.8
AL032627-21|CAD66221.1| 289|Caenorhabditis elegans Hypothetical... 29 1.8
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 1.8
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 1.8
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 1.8
Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z81079-8|CAD56581.2| 1175|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z81079-7|CAD21643.1| 778|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z81079-6|CAD21644.2| 1138|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z81079-1|CAB03084.1| 650|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z80215-18|CAD56563.2| 1175|Caenorhabditis elegans Hypothetical p... 29 2.4
Z80215-17|CAD21700.1| 778|Caenorhabditis elegans Hypothetical p... 29 2.4
Z80215-16|CAD21701.2| 1138|Caenorhabditis elegans Hypothetical p... 29 2.4
Z75711-3|CAB00035.3| 1204|Caenorhabditis elegans Hypothetical pr... 29 2.4
Z70756-4|CAA94788.1| 290|Caenorhabditis elegans Hypothetical pr... 29 2.4
AF164959-3|AAD47825.1| 650|Caenorhabditis elegans CLE-1C protei... 29 2.4
AF164959-2|AAD47824.1| 778|Caenorhabditis elegans CLE-1B protei... 29 2.4
AF164959-1|AAD47823.1| 1117|Caenorhabditis elegans CLE-1A protei... 29 2.4
AF040660-2|AAC71147.1| 302|Caenorhabditis elegans Collagen prot... 29 2.4
AC024775-6|AAK68452.2| 304|Caenorhabditis elegans Collagen prot... 29 2.4
Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen... 28 3.1
Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen... 28 3.1
U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein ... 28 3.1
U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein ... 28 3.1
U41624-5|AAF99941.1| 314|Caenorhabditis elegans Collagen protei... 28 3.1
U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) coll... 28 3.1
AL032627-19|CAD66222.1| 309|Caenorhabditis elegans Hypothetical... 28 3.1
AF003139-6|AAB54156.1| 327|Caenorhabditis elegans Collagen prot... 28 3.1
Z81487-3|CAB03997.2| 345|Caenorhabditis elegans Hypothetical pr... 28 4.1
Z70756-6|CAA94792.1| 290|Caenorhabditis elegans Hypothetical pr... 28 4.1
U53149-2|AAM29664.1| 451|Caenorhabditis elegans Hypothetical pr... 28 4.1
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 28 4.1
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 28 4.1
Z70286-1|CAA94294.2| 194|Caenorhabditis elegans Hypothetical pr... 27 5.5
M25477-1|AAA27991.1| 329|Caenorhabditis elegans collagen protein. 27 5.5
AF047663-7|AAC04448.1| 178|Caenorhabditis elegans Hypothetical ... 27 5.5
AC024797-2|AAF60705.3| 339|Caenorhabditis elegans Hypothetical ... 27 5.5
Z81138-4|CAB03474.1| 304|Caenorhabditis elegans Hypothetical pr... 27 7.2
Z81138-3|CAB63321.1| 304|Caenorhabditis elegans Hypothetical pr... 27 7.2
Z81138-1|CAB03475.1| 304|Caenorhabditis elegans Hypothetical pr... 27 7.2
Z71259-8|CAC70086.1| 205|Caenorhabditis elegans Hypothetical pr... 27 7.2
Z70682-4|CAA94581.1| 299|Caenorhabditis elegans Hypothetical pr... 27 7.2
Z46787-15|CAO78702.1| 829|Caenorhabditis elegans Hypothetical p... 27 7.2
Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical pr... 27 7.2
Z35596-1|CAO78712.1| 829|Caenorhabditis elegans Hypothetical pr... 27 7.2
U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA bi... 27 7.2
AL132952-24|CAB61143.2| 351|Caenorhabditis elegans Hypothetical... 27 7.2
AL032632-7|CAA21586.1| 313|Caenorhabditis elegans Hypothetical ... 27 7.2
AF047652-1|AAO44912.1| 294|Caenorhabditis elegans Collagen prot... 27 7.2
AF038613-10|AAB92047.1| 148|Caenorhabditis elegans Hypothetical... 27 7.2
Z92831-7|CAB07369.2| 2396|Caenorhabditis elegans Hypothetical pr... 27 9.5
Z81066-8|CAB02974.2| 2396|Caenorhabditis elegans Hypothetical pr... 27 9.5
Z71178-2|CAA94875.1| 297|Caenorhabditis elegans Hypothetical pr... 27 9.5
Z47808-12|CAB61003.1| 902|Caenorhabditis elegans Hypothetical p... 27 9.5
Z47808-11|CAD36487.1| 928|Caenorhabditis elegans Hypothetical p... 27 9.5
Z35595-13|CAA84639.2| 902|Caenorhabditis elegans Hypothetical p... 27 9.5
Z35595-12|CAD36478.1| 928|Caenorhabditis elegans Hypothetical p... 27 9.5
Z35595-11|CAJ34992.1| 769|Caenorhabditis elegans Hypothetical p... 27 9.5
U21308-10|AAN65281.1| 329|Caenorhabditis elegans Roller: helica... 27 9.5
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 27 9.5
AJ132947-1|CAC29085.1| 902|Caenorhabditis elegans receptor tyro... 27 9.5
AJ132946-1|CAC29084.1| 928|Caenorhabditis elegans receptor tyro... 27 9.5
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 27 9.5
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 27 9.5
>Z78066-9|CAN86643.1| 2488|Caenorhabditis elegans Hypothetical protein
W06A7.3f protein.
Length = 2488
Score = 30.3 bits (65), Expect = 0.77
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -2
Query: 171 RPEAHGRLDSEQRDQGDHSGPGEAGAGPLH 82
RP A G +DS ++ DH G E A P+H
Sbjct: 1918 RPSAEGSIDSSGFEKVDHEGLDEFAAPPVH 1947
>Z78066-7|CAE48544.1| 570|Caenorhabditis elegans Hypothetical
protein W06A7.3d protein.
Length = 570
Score = 30.3 bits (65), Expect = 0.77
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -2
Query: 171 RPEAHGRLDSEQRDQGDHSGPGEAGAGPLH 82
RP A G +DS ++ DH G E A P+H
Sbjct: 31 RPSAEGSIDSSGFEKVDHEGLDEFAAPPVH 60
>Z78066-6|CAB51467.1| 2484|Caenorhabditis elegans Hypothetical protein
W06A7.3c protein.
Length = 2484
Score = 30.3 bits (65), Expect = 0.77
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -2
Query: 171 RPEAHGRLDSEQRDQGDHSGPGEAGAGPLH 82
RP A G +DS ++ DH G E A P+H
Sbjct: 1918 RPSAEGSIDSSGFEKVDHEGLDEFAAPPVH 1947
>Z78066-4|CAB01522.2| 2607|Caenorhabditis elegans Hypothetical protein
W06A7.3a protein.
Length = 2607
Score = 30.3 bits (65), Expect = 0.77
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = -2
Query: 171 RPEAHGRLDSEQRDQGDHSGPGEAGAGPLH 82
RP A G +DS ++ DH G E A P+H
Sbjct: 1918 RPSAEGSIDSSGFEKVDHEGLDEFAAPPVH 1947
>U55373-5|AAC25888.1| 289|Caenorhabditis elegans Collagen protein
140, isoform a protein.
Length = 289
Score = 29.9 bits (64), Expect = 1.0
Identities = 20/69 (28%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Frame = -2
Query: 258 PKGEAHVRLH*GEAAS-GLPAREVERGASSRPEAHGRLDSEQRDQGDHSGPGEAGAGPLH 82
P+GE G+ G P E G + +P + G D E G+ PG GA +
Sbjct: 203 PRGEPGTEYKPGQPGRPGPPGPRGEAGPAGQPGSPGN-DGESGKPGNAGRPGPPGAPGKN 261
Query: 81 RGPGFAGQE 55
PG G++
Sbjct: 262 GTPGVRGED 270
>U53340-6|AAA96210.1| 305|Caenorhabditis elegans Atp synthase b
homolog protein 2 protein.
Length = 305
Score = 29.5 bits (63), Expect = 1.4
Identities = 19/65 (29%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = -3
Query: 254 RERLMYAYTEVKRRLDYQLEKSNVERRLAQKHMVDWIVSNVTKAITPDQEK-QALDRCIA 78
R+ + TE+KRR+DY E + R+ ++ ++ I S V K + K + L I
Sbjct: 237 RKNVQSVATELKRRIDYLKETEESKARVEREQLLKLINSEVDKEFSDRSFKDKYLQNAIQ 296
Query: 77 DLASL 63
L L
Sbjct: 297 QLKGL 301
>U23179-7|AAC46721.1| 782|Caenorhabditis elegans Hypothetical
protein C27D6.1 protein.
Length = 782
Score = 29.5 bits (63), Expect = 1.4
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
Frame = -1
Query: 463 SREIRTKVAAWLDKEVEATENEWXEGRNQTVKALEDA-IEGEKT----EQWRAQGQELLI 299
S E R K KE+EA +W + + K L + +E +T E+W+ + QE+ I
Sbjct: 237 SLERRLKANEKARKEIEAEAEKWKDRATRNSKRLPELELELAETVQAKEEWQVKSQEMEI 296
Query: 298 QAKK 287
Q K+
Sbjct: 297 QNKQ 300
>Z46242-8|CAA86329.1| 301|Caenorhabditis elegans Hypothetical
protein F35G12.10 protein.
Length = 301
Score = 29.1 bits (62), Expect = 1.8
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Frame = -3
Query: 254 RERLMYAYTEVKRRLDYQLEKSNVERRLAQKHMVDWIVSNVTKAIT-PDQEKQALDRCIA 78
R+ + E+KRR++Y E + R + ++ I +V K ++ D +++ L I
Sbjct: 235 RKNVQTISNEIKRRIEYLKETEETKARFERDQLLKLINDSVEKQVSQKDFQEKFLQNAIQ 294
Query: 77 DLASLA 60
L +A
Sbjct: 295 QLKGIA 300
>AL032627-21|CAD66221.1| 289|Caenorhabditis elegans Hypothetical
protein Y41C4A.19 protein.
Length = 289
Score = 29.1 bits (62), Expect = 1.8
Identities = 24/67 (35%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = -2
Query: 258 PKGEAHVRLH*GEA-ASGLPAREVERGASSRPEAHGRLDSEQRDQGDHSGPGEAGAGPLH 82
PKG+ H G+A A G P V+ + S P A G+ G PG +GA
Sbjct: 174 PKGQRGAPGHPGQAGAPGQPG--VDAQSQSTPGAPGQA-------GPQGPPGSSGAPGAP 224
Query: 81 RGPGFAG 61
GPGF G
Sbjct: 225 GGPGFPG 231
Score = 27.5 bits (58), Expect = 5.5
Identities = 17/54 (31%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Frame = -2
Query: 183 GASSRPEAHGR--LDSEQRDQGDHSGPGEAGAGPLHRGPGFAGQEVNGSERYLC 28
G+S P A G +G PG+ GA PG GQ ER +C
Sbjct: 216 GSSGAPGAPGGPGFPGAPGSKGPSGAPGQPGANGNPGAPGQPGQSGGSGERGIC 269
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.1 bits (62), Expect = 1.8
Identities = 16/63 (25%), Positives = 25/63 (39%)
Frame = -2
Query: 261 PPKGEAHVRLH*GEAASGLPAREVERGASSRPEAHGRLDSEQRDQGDHSGPGEAGAGPLH 82
PP+G G +GLP+R+ + RP S + GPG++ +
Sbjct: 426 PPRGSPPT----GSPPTGLPSRQKRQAPEDRPTGSPPTGSPPTGRPHRGGPGKSESSESR 481
Query: 81 RGP 73
GP
Sbjct: 482 EGP 484
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.1 bits (62), Expect = 1.8
Identities = 16/63 (25%), Positives = 25/63 (39%)
Frame = -2
Query: 261 PPKGEAHVRLH*GEAASGLPAREVERGASSRPEAHGRLDSEQRDQGDHSGPGEAGAGPLH 82
PP+G G +GLP+R+ + RP S + GPG++ +
Sbjct: 447 PPRGSPPT----GSPPTGLPSRQKRQAPEDRPTGSPPTGSPPTGRPHRGGPGKSESSESR 502
Query: 81 RGP 73
GP
Sbjct: 503 EGP 505
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.1 bits (62), Expect = 1.8
Identities = 16/63 (25%), Positives = 25/63 (39%)
Frame = -2
Query: 261 PPKGEAHVRLH*GEAASGLPAREVERGASSRPEAHGRLDSEQRDQGDHSGPGEAGAGPLH 82
PP+G G +GLP+R+ + RP S + GPG++ +
Sbjct: 432 PPRGSPPT----GSPPTGLPSRQKRQAPEDRPTGSPPTGSPPTGRPHRGGPGKSESSESR 487
Query: 81 RGP 73
GP
Sbjct: 488 EGP 490
>Z81518-1|CAB04214.3| 601|Caenorhabditis elegans Hypothetical
protein F28D9.1 protein.
Length = 601
Score = 28.7 bits (61), Expect = 2.4
Identities = 17/45 (37%), Positives = 20/45 (44%)
Frame = +1
Query: 307 APVPARATAPSSLPQLRPPVLSRFGSDLRSIRSRSLQLPCPTKRQ 441
+P P R +PS PQ S GS RS R R P +RQ
Sbjct: 448 SPAPRRRRSPSKSPQAPRRRRSPSGSKSRSPRRRRSPAAAPRRRQ 492
>Z81079-8|CAD56581.2| 1175|Caenorhabditis elegans Hypothetical
protein C36B1.1d protein.
Length = 1175
Score = 28.7 bits (61), Expect = 2.4
Identities = 18/42 (42%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = -2
Query: 210 GLPAREVERGASSRPEAHGRLDSEQRDQGDHSGPGEAG-AGP 88
G P + ERGA P HG + DQG PG G AGP
Sbjct: 725 GAPGHQGERGADGAPGLHG----SRGDQGLPGPPGMPGLAGP 762
>Z81079-7|CAD21643.1| 778|Caenorhabditis elegans Hypothetical
protein C36B1.1b protein.
Length = 778
Score = 28.7 bits (61), Expect = 2.4
Identities = 18/42 (42%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = -2
Query: 210 GLPAREVERGASSRPEAHGRLDSEQRDQGDHSGPGEAG-AGP 88
G P + ERGA P HG + DQG PG G AGP
Sbjct: 328 GAPGHQGERGADGAPGLHG----SRGDQGLPGPPGMPGLAGP 365
>Z81079-6|CAD21644.2| 1138|Caenorhabditis elegans Hypothetical
protein C36B1.1a protein.
Length = 1138
Score = 28.7 bits (61), Expect = 2.4
Identities = 18/42 (42%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = -2
Query: 210 GLPAREVERGASSRPEAHGRLDSEQRDQGDHSGPGEAG-AGP 88
G P + ERGA P HG + DQG PG G AGP
Sbjct: 688 GAPGHQGERGADGAPGLHG----SRGDQGLPGPPGMPGLAGP 725
>Z81079-1|CAB03084.1| 650|Caenorhabditis elegans Hypothetical
protein C36B1.1c protein.
Length = 650
Score = 28.7 bits (61), Expect = 2.4
Identities = 18/42 (42%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = -2
Query: 210 GLPAREVERGASSRPEAHGRLDSEQRDQGDHSGPGEAG-AGP 88
G P + ERGA P HG + DQG PG G AGP
Sbjct: 200 GAPGHQGERGADGAPGLHG----SRGDQGLPGPPGMPGLAGP 237
>Z80215-18|CAD56563.2| 1175|Caenorhabditis elegans Hypothetical
protein C36B1.1d protein.
Length = 1175
Score = 28.7 bits (61), Expect = 2.4
Identities = 18/42 (42%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = -2
Query: 210 GLPAREVERGASSRPEAHGRLDSEQRDQGDHSGPGEAG-AGP 88
G P + ERGA P HG + DQG PG G AGP
Sbjct: 725 GAPGHQGERGADGAPGLHG----SRGDQGLPGPPGMPGLAGP 762
>Z80215-17|CAD21700.1| 778|Caenorhabditis elegans Hypothetical
protein C36B1.1b protein.
Length = 778
Score = 28.7 bits (61), Expect = 2.4
Identities = 18/42 (42%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = -2
Query: 210 GLPAREVERGASSRPEAHGRLDSEQRDQGDHSGPGEAG-AGP 88
G P + ERGA P HG + DQG PG G AGP
Sbjct: 328 GAPGHQGERGADGAPGLHG----SRGDQGLPGPPGMPGLAGP 365
>Z80215-16|CAD21701.2| 1138|Caenorhabditis elegans Hypothetical
protein C36B1.1a protein.
Length = 1138
Score = 28.7 bits (61), Expect = 2.4
Identities = 18/42 (42%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = -2
Query: 210 GLPAREVERGASSRPEAHGRLDSEQRDQGDHSGPGEAG-AGP 88
G P + ERGA P HG + DQG PG G AGP
Sbjct: 688 GAPGHQGERGADGAPGLHG----SRGDQGLPGPPGMPGLAGP 725
>Z75711-3|CAB00035.3| 1204|Caenorhabditis elegans Hypothetical
protein K02B12.5 protein.
Length = 1204
Score = 28.7 bits (61), Expect = 2.4
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Frame = -1
Query: 433 WLDKEVEATENEWXEGRNQTVKALEDAIEGEKTEQ----WRAQGQELLIQAKKENVLLQL 266
W DK E +W + +T E I+ E E W+ +++L + K+EN LL+L
Sbjct: 447 WSDKRNEENAIKW---KQETDNIPEVVIKNEDDETDVLYWKLSDEDVLERCKEENELLKL 503
Query: 265 E 263
+
Sbjct: 504 D 504
>Z70756-4|CAA94788.1| 290|Caenorhabditis elegans Hypothetical
protein T06E4.4 protein.
Length = 290
Score = 28.7 bits (61), Expect = 2.4
Identities = 22/61 (36%), Positives = 26/61 (42%), Gaps = 3/61 (4%)
Frame = -2
Query: 216 ASGLPAREVERGASSRPEAHGRLD--SEQRDQGDHSGPGEAGAGPLHRG-PGFAGQEVNG 46
A G P + GA + G Q GD PG+AGA P H G PG GQ G
Sbjct: 141 APGAPGPQGPSGAPGQDAVGGGPGPAGPQGPAGDAGAPGQAGA-PGHPGAPGQGGQRSRG 199
Query: 45 S 43
+
Sbjct: 200 T 200
>AF164959-3|AAD47825.1| 650|Caenorhabditis elegans CLE-1C protein
protein.
Length = 650
Score = 28.7 bits (61), Expect = 2.4
Identities = 18/42 (42%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = -2
Query: 210 GLPAREVERGASSRPEAHGRLDSEQRDQGDHSGPGEAG-AGP 88
G P + ERGA P HG + DQG PG G AGP
Sbjct: 200 GAPGHQGERGADGAPGLHG----SRGDQGLPGPPGMPGLAGP 237
>AF164959-2|AAD47824.1| 778|Caenorhabditis elegans CLE-1B protein
protein.
Length = 778
Score = 28.7 bits (61), Expect = 2.4
Identities = 18/42 (42%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = -2
Query: 210 GLPAREVERGASSRPEAHGRLDSEQRDQGDHSGPGEAG-AGP 88
G P + ERGA P HG + DQG PG G AGP
Sbjct: 328 GAPGHQGERGADGAPGLHG----SRGDQGLPGPPGMPGLAGP 365
>AF164959-1|AAD47823.1| 1117|Caenorhabditis elegans CLE-1A protein
protein.
Length = 1117
Score = 28.7 bits (61), Expect = 2.4
Identities = 18/42 (42%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = -2
Query: 210 GLPAREVERGASSRPEAHGRLDSEQRDQGDHSGPGEAG-AGP 88
G P + ERGA P HG + DQG PG G AGP
Sbjct: 667 GAPGHQGERGADGAPGLHG----SRGDQGLPGPPGMPGLAGP 704
>AF040660-2|AAC71147.1| 302|Caenorhabditis elegans Collagen protein
88 protein.
Length = 302
Score = 28.7 bits (61), Expect = 2.4
Identities = 17/60 (28%), Positives = 24/60 (40%)
Frame = -2
Query: 222 EAASGLPAREVERGASSRPEAHGRLDSEQRDQGDHSGPGEAGAGPLHRGPGFAGQEVNGS 43
+ +G P + + G+ P G+ QGD PG G PG GQ NG+
Sbjct: 150 DGPAGAPGADGQAGSPGAPGQDGQPGGPGA-QGDAGAPGNDGTPGQDGAPGQNGQRGNGA 208
>AC024775-6|AAK68452.2| 304|Caenorhabditis elegans Collagen protein
108 protein.
Length = 304
Score = 28.7 bits (61), Expect = 2.4
Identities = 18/62 (29%), Positives = 26/62 (41%)
Frame = -2
Query: 213 SGLPAREVERGASSRPEAHGRLDSEQRDQGDHSGPGEAGAGPLHRGPGFAGQEVNGSERY 34
+G P + GA +P H +G + PG GA PG AG +G E+
Sbjct: 226 AGPPGPQGPPGAPGQP-GHDGQPGTPGPKGPNGNPGAPGADGNPGTPGVAGVAGSGGEKG 284
Query: 33 LC 28
+C
Sbjct: 285 VC 286
>Z22964-2|CAA80537.1| 1759|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1759
Score = 28.3 bits (60), Expect = 3.1
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 8/63 (12%)
Frame = -2
Query: 222 EAASGLPAREVERGASSRPEAHGRLDSEQRD--QGDHSGPGEAG-AGP-----LHRGPGF 67
+ SG+P + +RG + P G RD +GD PG+ G GP L PGF
Sbjct: 1003 DGLSGVPGMKGDRGFNGLPGEKGEAGPAARDGQKGDAGLPGQPGLRGPQGPSGLPGVPGF 1062
Query: 66 AGQ 58
G+
Sbjct: 1063 KGE 1065
Score = 27.1 bits (57), Expect = 7.2
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2
Query: 129 QGDHSGPGEAGAGPLHRGPGFAGQEVN 49
+GD PG++GA L PG+ G + N
Sbjct: 925 KGDLGAPGQSGAPGLPGAPGYPGMKGN 951
Score = 26.6 bits (56), Expect = 9.5
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Frame = -2
Query: 258 PKGEAHVRLH*GEAASGLPAREVERGASSRPEAHGR--LDSEQRDQGD--HSGPGEAGAG 91
PKGE R G++ GLP ++ + G P G L + GD + PG G
Sbjct: 445 PKGEPGYRGTPGQSIPGLPGKDGKPGLDGAPGRKGENGLPGVRGPPGDSLNGLPGAPGQR 504
Query: 90 PLHRGPGFAGQE-VNG 46
G+ G++ VNG
Sbjct: 505 GAPGPNGYDGRDGVNG 520
>Z22964-1|CAA80536.1| 1758|Caenorhabditis elegans a2(IV) collagen
protein.
Length = 1758
Score = 28.3 bits (60), Expect = 3.1
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 8/63 (12%)
Frame = -2
Query: 222 EAASGLPAREVERGASSRPEAHGRLDSEQRD--QGDHSGPGEAG-AGP-----LHRGPGF 67
+ SG+P + +RG + P G RD +GD PG+ G GP L PGF
Sbjct: 1002 DGLSGVPGMKGDRGFNGLPGEKGEAGPAARDGQKGDAGLPGQPGLRGPQGPSGLPGVPGF 1061
Query: 66 AGQ 58
G+
Sbjct: 1062 KGE 1064
Score = 27.1 bits (57), Expect = 7.2
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2
Query: 129 QGDHSGPGEAGAGPLHRGPGFAGQEVN 49
+GD PG++GA L PG+ G + N
Sbjct: 924 KGDLGAPGQSGAPGLPGAPGYPGMKGN 950
Score = 26.6 bits (56), Expect = 9.5
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Frame = -2
Query: 258 PKGEAHVRLH*GEAASGLPAREVERGASSRPEAHGR--LDSEQRDQGD--HSGPGEAGAG 91
PKGE R G++ GLP ++ + G P G L + GD + PG G
Sbjct: 444 PKGEPGYRGTPGQSIPGLPGKDGKPGLDGAPGRKGENGLPGVRGPPGDSLNGLPGAPGQR 503
Query: 90 PLHRGPGFAGQE-VNG 46
G+ G++ VNG
Sbjct: 504 GAPGPNGYDGRDGVNG 519
>U53342-4|AAA96216.1| 1758|Caenorhabditis elegans Lethal protein 2,
isoform a protein.
Length = 1758
Score = 28.3 bits (60), Expect = 3.1
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 8/63 (12%)
Frame = -2
Query: 222 EAASGLPAREVERGASSRPEAHGRLDSEQRD--QGDHSGPGEAG-AGP-----LHRGPGF 67
+ SG+P + +RG + P G RD +GD PG+ G GP L PGF
Sbjct: 1002 DGLSGVPGMKGDRGFNGLPGEKGEAGPAARDGQKGDAGLPGQPGLRGPQGPSGLPGVPGF 1061
Query: 66 AGQ 58
G+
Sbjct: 1062 KGE 1064
Score = 27.1 bits (57), Expect = 7.2
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2
Query: 129 QGDHSGPGEAGAGPLHRGPGFAGQEVN 49
+GD PG++GA L PG+ G + N
Sbjct: 924 KGDLGAPGQSGAPGLPGAPGYPGMKGN 950
Score = 26.6 bits (56), Expect = 9.5
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Frame = -2
Query: 258 PKGEAHVRLH*GEAASGLPAREVERGASSRPEAHGR--LDSEQRDQGD--HSGPGEAGAG 91
PKGE R G++ GLP ++ + G P G L + GD + PG G
Sbjct: 444 PKGEPGYRGTPGQSIPGLPGKDGKPGLDGAPGRKGENGLPGVRGPPGDSLNGLPGAPGQR 503
Query: 90 PLHRGPGFAGQE-VNG 46
G+ G++ VNG
Sbjct: 504 GAPGPNGYDGRDGVNG 519
>U53342-3|AAA96215.1| 1759|Caenorhabditis elegans Lethal protein 2,
isoform b protein.
Length = 1759
Score = 28.3 bits (60), Expect = 3.1
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 8/63 (12%)
Frame = -2
Query: 222 EAASGLPAREVERGASSRPEAHGRLDSEQRD--QGDHSGPGEAG-AGP-----LHRGPGF 67
+ SG+P + +RG + P G RD +GD PG+ G GP L PGF
Sbjct: 1003 DGLSGVPGMKGDRGFNGLPGEKGEAGPAARDGQKGDAGLPGQPGLRGPQGPSGLPGVPGF 1062
Query: 66 AGQ 58
G+
Sbjct: 1063 KGE 1065
Score = 27.1 bits (57), Expect = 7.2
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2
Query: 129 QGDHSGPGEAGAGPLHRGPGFAGQEVN 49
+GD PG++GA L PG+ G + N
Sbjct: 925 KGDLGAPGQSGAPGLPGAPGYPGMKGN 951
Score = 26.6 bits (56), Expect = 9.5
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Frame = -2
Query: 258 PKGEAHVRLH*GEAASGLPAREVERGASSRPEAHGR--LDSEQRDQGD--HSGPGEAGAG 91
PKGE R G++ GLP ++ + G P G L + GD + PG G
Sbjct: 445 PKGEPGYRGTPGQSIPGLPGKDGKPGLDGAPGRKGENGLPGVRGPPGDSLNGLPGAPGQR 504
Query: 90 PLHRGPGFAGQE-VNG 46
G+ G++ VNG
Sbjct: 505 GAPGPNGYDGRDGVNG 520
>U41624-5|AAF99941.1| 314|Caenorhabditis elegans Collagen protein
174 protein.
Length = 314
Score = 28.3 bits (60), Expect = 3.1
Identities = 16/42 (38%), Positives = 20/42 (47%)
Frame = -2
Query: 186 RGASSRPEAHGRLDSEQRDQGDHSGPGEAGAGPLHRGPGFAG 61
+G S P A G D ++G PG AGA + PG AG
Sbjct: 184 KGPSGNPGAPGT-DGPAGNKGGQGPPGNAGAPGANGNPGNAG 224
>U22327-1|AAA64312.1| 1795|Caenorhabditis elegans alpha2(IV) collagen
protein.
Length = 1795
Score = 28.3 bits (60), Expect = 3.1
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 8/63 (12%)
Frame = -2
Query: 222 EAASGLPAREVERGASSRPEAHGRLDSEQRD--QGDHSGPGEAG-AGP-----LHRGPGF 67
+ SG+P + +RG + P G RD +GD PG+ G GP L PGF
Sbjct: 1039 DGLSGVPGMKGDRGFNGLPGEKGEAGPAARDGQKGDAGLPGQPGLRGPQGPSGLPGVPGF 1098
Query: 66 AGQ 58
G+
Sbjct: 1099 KGE 1101
Score = 27.1 bits (57), Expect = 7.2
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2
Query: 129 QGDHSGPGEAGAGPLHRGPGFAGQEVN 49
+GD PG++GA L PG+ G + N
Sbjct: 961 KGDLGAPGQSGAPGLPGAPGYPGMKGN 987
Score = 26.6 bits (56), Expect = 9.5
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Frame = -2
Query: 258 PKGEAHVRLH*GEAASGLPAREVERGASSRPEAHGR--LDSEQRDQGD--HSGPGEAGAG 91
PKGE R G++ GLP ++ + G P G L + GD + PG G
Sbjct: 481 PKGEPGYRGTPGQSIPGLPGKDGKPGLDGAPGRKGENGLPGVRGPPGDSLNGLPGAPGQR 540
Query: 90 PLHRGPGFAGQE-VNG 46
G+ G++ VNG
Sbjct: 541 GAPGPNGYDGRDGVNG 556
>AL032627-19|CAD66222.1| 309|Caenorhabditis elegans Hypothetical
protein Y41C4A.16 protein.
Length = 309
Score = 28.3 bits (60), Expect = 3.1
Identities = 23/67 (34%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Frame = -2
Query: 258 PKGEAHVRLH*GEAASGLPARE-VERGASSRPEAHGRLDSEQRDQGDHSGPGEAGAGPLH 82
PKG+ H G+A S P R V+ + S P A G+ G PG +GA
Sbjct: 195 PKGQRGAPGHPGQAGS--PGRPGVDAQSQSNPGAPGQA-------GPQGPPGPSGAPGAP 245
Query: 81 RGPGFAG 61
GPG+ G
Sbjct: 246 GGPGYPG 252
>AF003139-6|AAB54156.1| 327|Caenorhabditis elegans Collagen protein
45 protein.
Length = 327
Score = 28.3 bits (60), Expect = 3.1
Identities = 21/69 (30%), Positives = 29/69 (42%), Gaps = 3/69 (4%)
Frame = -2
Query: 225 GEAASGLPAREVERGASSRPEAHGRLDSEQRDQGDHSGPGEAG-AGPLHR--GPGFAGQE 55
GEA G P R+ E G P G + G+ PG+ G GP + PG G +
Sbjct: 248 GEAPPGPPGRQGEMGPQGPPGPPGPRGKDGAG-GEKGAPGDQGNPGPYGKPGQPGAPGPD 306
Query: 54 VNGSERYLC 28
+ E+ C
Sbjct: 307 GSAGEKGGC 315
>Z81487-3|CAB03997.2| 345|Caenorhabditis elegans Hypothetical
protein C54E10.4 protein.
Length = 345
Score = 27.9 bits (59), Expect = 4.1
Identities = 17/59 (28%), Positives = 27/59 (45%)
Frame = +3
Query: 144 YPVDHVLLGETTLHVRLLELVVQTPLHLSVGVHEPLP*AASSCRSTFSFLAWMRSSCPC 320
Y + L T+ + + +++ TPL++ + V A STFSFL S C C
Sbjct: 234 YQMHRTALISLTMQMVIPGMLLTTPLYMILVVIMTNSLAFEELASTFSFLMSSHSMCQC 292
>Z70756-6|CAA94792.1| 290|Caenorhabditis elegans Hypothetical
protein T06E4.6 protein.
Length = 290
Score = 27.9 bits (59), Expect = 4.1
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -2
Query: 138 QRDQGDHSGPGEAGAGPLHRG-PGFAGQEVNGS 43
Q GD PG+AGA P H G PG GQ G+
Sbjct: 169 QGPAGDAGAPGQAGA-PGHPGAPGQGGQRSRGT 200
>U53149-2|AAM29664.1| 451|Caenorhabditis elegans Hypothetical
protein C24B5.2a protein.
Length = 451
Score = 27.9 bits (59), Expect = 4.1
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +1
Query: 310 PVPARATAPSSLPQLRPPV 366
P P RATAP+SLP + PV
Sbjct: 130 PRPTRATAPASLPMHQNPV 148
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 27.9 bits (59), Expect = 4.1
Identities = 16/51 (31%), Positives = 19/51 (37%)
Frame = -2
Query: 186 RGASSRPEAHGRLDSEQRDQGDHSGPGEAGAGPLHRGPGFAGQEVNGSERY 34
RG SR G + G GP + G + GPG GQ G Y
Sbjct: 169 RGGRSRDGQRGGYNGGGGGGGGWGGPAQRGGPGAYGGPGGGGQGGYGGGNY 219
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 27.9 bits (59), Expect = 4.1
Identities = 16/51 (31%), Positives = 19/51 (37%)
Frame = -2
Query: 186 RGASSRPEAHGRLDSEQRDQGDHSGPGEAGAGPLHRGPGFAGQEVNGSERY 34
RG SR G + G GP + G + GPG GQ G Y
Sbjct: 207 RGGRSRDGQRGGYNGGGGGGGGWGGPAQRGGPGAYGGPGGGGQGGYGGGNY 257
>Z70286-1|CAA94294.2| 194|Caenorhabditis elegans Hypothetical
protein K08C7.4 protein.
Length = 194
Score = 27.5 bits (58), Expect = 5.5
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Frame = -3
Query: 380 PNRESTGGRN*GREDG--AVARAGTGAPHPGQEGERAPAARGR 258
P R + G R+ +E G +V + A ++ ERAP+ARGR
Sbjct: 87 PRRSTRGKRSYDQETGGRSVRKVVKKAKEVNKKPERAPSARGR 129
>M25477-1|AAA27991.1| 329|Caenorhabditis elegans collagen protein.
Length = 329
Score = 27.5 bits (58), Expect = 5.5
Identities = 20/55 (36%), Positives = 22/55 (40%)
Frame = -2
Query: 210 GLPAREVERGASSRPEAHGRLDSEQRDQGDHSGPGEAGAGPLHRGPGFAGQEVNG 46
G P R+ +GA P A GRL QG PG G PG GQ G
Sbjct: 231 GRPGRDGMKGA---PGARGRLIPVPGPQGAPGKPGPIGPPGPKGNPGPDGQSYQG 282
>AF047663-7|AAC04448.1| 178|Caenorhabditis elegans Hypothetical
protein W09G12.6 protein.
Length = 178
Score = 27.5 bits (58), Expect = 5.5
Identities = 15/32 (46%), Positives = 18/32 (56%)
Frame = +2
Query: 128 WSRCSLSSRPCASGRDDAPRSTSRAGSPDAAS 223
W S SSR +SGR A +S+A SP AS
Sbjct: 42 WLGSSGSSRSRSSGRSAASAGSSQAASPAGAS 73
>AC024797-2|AAF60705.3| 339|Caenorhabditis elegans Hypothetical
protein Y48G8AR.2 protein.
Length = 339
Score = 27.5 bits (58), Expect = 5.5
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = -1
Query: 427 DKEVEATENEWXEGRNQTVKALEDAIEGEKTEQWR 323
++E+ A +NEW +G ++ K E + K+ + R
Sbjct: 149 ERELSAAKNEWVQGSDEAEKTSEQLLNVMKSSEKR 183
>Z81138-4|CAB03474.1| 304|Caenorhabditis elegans Hypothetical
protein W05B2.6 protein.
Length = 304
Score = 27.1 bits (57), Expect = 7.2
Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Frame = -2
Query: 222 EAASGLPAREVERGASSRPEAHGRLDSEQR---DQGDHSGPGEAGAGPLHRGPGFAG 61
+ A G P + GA +P + + +S G PG AG+ GPG AG
Sbjct: 191 KGAPGAPGNPGQAGAPGQPGSDAQSESSPGAPGQAGPQGPPGPAGSPGAPGGPGQAG 247
Score = 26.6 bits (56), Expect = 9.5
Identities = 17/48 (35%), Positives = 21/48 (43%)
Frame = -2
Query: 204 PAREVERGASSRPEAHGRLDSEQRDQGDHSGPGEAGAGPLHRGPGFAG 61
P + +G + P A G QGD PG+AG G PG AG
Sbjct: 149 PCKPCPQGPAGAPGAPG-------PQGDAGAPGQAGQGSGAGAPGPAG 189
>Z81138-3|CAB63321.1| 304|Caenorhabditis elegans Hypothetical
protein W05B2.5 protein.
Length = 304
Score = 27.1 bits (57), Expect = 7.2
Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Frame = -2
Query: 222 EAASGLPAREVERGASSRPEAHGRLDSEQR---DQGDHSGPGEAGAGPLHRGPGFAG 61
+ A G P + GA +P + + +S G PG AG+ GPG AG
Sbjct: 191 KGAPGAPGNPGQAGAPGQPGSDAQSESSPGAPGQAGPQGPPGPAGSPGAPGGPGQAG 247
Score = 26.6 bits (56), Expect = 9.5
Identities = 17/48 (35%), Positives = 21/48 (43%)
Frame = -2
Query: 204 PAREVERGASSRPEAHGRLDSEQRDQGDHSGPGEAGAGPLHRGPGFAG 61
P + +G + P A G QGD PG+AG G PG AG
Sbjct: 149 PCKPCPQGPAGAPGAPG-------PQGDAGAPGQAGQGSGAGAPGPAG 189
>Z81138-1|CAB03475.1| 304|Caenorhabditis elegans Hypothetical
protein W05B2.1 protein.
Length = 304
Score = 27.1 bits (57), Expect = 7.2
Identities = 17/57 (29%), Positives = 24/57 (42%), Gaps = 3/57 (5%)
Frame = -2
Query: 222 EAASGLPAREVERGASSRPEAHGRLDSEQR---DQGDHSGPGEAGAGPLHRGPGFAG 61
+ A G P + GA +P + + +S G PG AG+ GPG AG
Sbjct: 191 KGAPGAPGNPGQAGAPGQPGSDAQSESSPGAPGQAGPQGPPGPAGSPGAPGGPGQAG 247
Score = 26.6 bits (56), Expect = 9.5
Identities = 17/48 (35%), Positives = 21/48 (43%)
Frame = -2
Query: 204 PAREVERGASSRPEAHGRLDSEQRDQGDHSGPGEAGAGPLHRGPGFAG 61
P + +G + P A G QGD PG+AG G PG AG
Sbjct: 149 PCKPCPQGPAGAPGAPG-------PQGDAGAPGQAGQGSGAGAPGPAG 189
>Z71259-8|CAC70086.1| 205|Caenorhabditis elegans Hypothetical
protein F13G3.11 protein.
Length = 205
Score = 27.1 bits (57), Expect = 7.2
Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Frame = -3
Query: 302 HPGQEGERAPAARGRLRERLMYAYTEVKRRLDYQLE-KSNVER--RLAQKHMVDW 147
H + E A R + +L VKR +Y E ++N R + A KH+VDW
Sbjct: 131 HLFPDEEMAEFVRKNIGSQLRQVQGVVKRSDEYTAEERANFPRVVKFADKHVVDW 185
>Z70682-4|CAA94581.1| 299|Caenorhabditis elegans Hypothetical
protein F08G5.4 protein.
Length = 299
Score = 27.1 bits (57), Expect = 7.2
Identities = 19/57 (33%), Positives = 24/57 (42%)
Frame = -2
Query: 216 ASGLPAREVERGASSRPEAHGRLDSEQRDQGDHSGPGEAGAGPLHRGPGFAGQEVNG 46
A G + + G + +P A G E GD PG+AGA PG GQ G
Sbjct: 155 APGPDGQPGQDGPAGQPGAPGPAGPE----GDAGAPGDAGAPGAPGAPGQDGQRGTG 207
>Z46787-15|CAO78702.1| 829|Caenorhabditis elegans Hypothetical
protein C30D11.1a protein.
Length = 829
Score = 27.1 bits (57), Expect = 7.2
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -2
Query: 144 SEQRDQGDHSGPGEAGAGPLHRGPGFAGQEVNGSER 37
S ++G SG G G+G L PG G + S R
Sbjct: 39 SRSTNRGGVSGTGGGGSGGLQGAPGAGGPRASHSSR 74
>Z46676-8|CAB60993.2| 388|Caenorhabditis elegans Hypothetical
protein C08B11.5 protein.
Length = 388
Score = 27.1 bits (57), Expect = 7.2
Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = +1
Query: 292 WPG*GAPVPARATAPSSLPQL-RPPVLSRFG 381
WP P P R P +P + PP SRFG
Sbjct: 296 WPPPPPPPPGRTPGPPGMPGMPPPPPPSRFG 326
>Z35596-1|CAO78712.1| 829|Caenorhabditis elegans Hypothetical
protein C30D11.1a protein.
Length = 829
Score = 27.1 bits (57), Expect = 7.2
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = -2
Query: 144 SEQRDQGDHSGPGEAGAGPLHRGPGFAGQEVNGSER 37
S ++G SG G G+G L PG G + S R
Sbjct: 39 SRSTNRGGVSGTGGGGSGGLQGAPGAGGPRASHSSR 74
>U24189-3|AAC47514.1| 398|Caenorhabditis elegans RRM-type RNA
binding protein protein.
Length = 398
Score = 27.1 bits (57), Expect = 7.2
Identities = 13/31 (41%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Frame = +1
Query: 292 WPG*GAPVPARATAPSSLPQL-RPPVLSRFG 381
WP P P R P +P + PP SRFG
Sbjct: 306 WPPPPPPPPGRTPGPPGMPGMPPPPPPSRFG 336
>AL132952-24|CAB61143.2| 351|Caenorhabditis elegans Hypothetical
protein Y51H4A.9 protein.
Length = 351
Score = 27.1 bits (57), Expect = 7.2
Identities = 20/59 (33%), Positives = 25/59 (42%), Gaps = 1/59 (1%)
Frame = -2
Query: 213 SGLPAREVERGASSRP-EAHGRLDSEQRDQGDHSGPGEAGAGPLHRGPGFAGQEVNGSE 40
+G P GA P +A L QGD PG+ GA PG G+ +GSE
Sbjct: 280 AGPPGPPGPSGAPGHPGQAGSSLPGAPGPQGDAGAPGQPGAPGQQGEPGEDGE--SGSE 336
>AL032632-7|CAA21586.1| 313|Caenorhabditis elegans Hypothetical
protein Y11D7A.11 protein.
Length = 313
Score = 27.1 bits (57), Expect = 7.2
Identities = 15/52 (28%), Positives = 21/52 (40%)
Frame = -2
Query: 210 GLPAREVERGASSRPEAHGRLDSEQRDQGDHSGPGEAGAGPLHRGPGFAGQE 55
G P + ERG + GR + + PG+AG L PG G +
Sbjct: 202 GRPGEQGERGPNGEDGRPGRRGDDGMPGTVNEIPGQAGPPGLRGAPGATGSQ 253
>AF047652-1|AAO44912.1| 294|Caenorhabditis elegans Collagen protein
107, isoform b protein.
Length = 294
Score = 27.1 bits (57), Expect = 7.2
Identities = 22/58 (37%), Positives = 24/58 (41%)
Frame = -2
Query: 216 ASGLPAREVERGASSRPEAHGRLDSEQRDQGDHSGPGEAGAGPLHRGPGFAGQEVNGS 43
A G P G P A G EQ D G GEAGA GPG GQ +G+
Sbjct: 153 ADGQPGAPGNAGQDGAPGAAG----EQGDAGAAGQDGEAGAPG---GPGKNGQRGSGA 203
>AF038613-10|AAB92047.1| 148|Caenorhabditis elegans Hypothetical
protein F42A6.2 protein.
Length = 148
Score = 27.1 bits (57), Expect = 7.2
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = +2
Query: 173 DDAPRSTSRAGSPDAASPQCRRT*ASP 253
D PRST A +P A+P+ R T ++P
Sbjct: 73 DPEPRSTLAAPTPTPAAPELRSTLSAP 99
>Z92831-7|CAB07369.2| 2396|Caenorhabditis elegans Hypothetical protein
F22G12.5 protein.
Length = 2396
Score = 26.6 bits (56), Expect = 9.5
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 307 APVPARATAPSSLPQLRPP 363
+PVP+ T PS PQ+ PP
Sbjct: 1492 SPVPSTQTTPSRPPQMPPP 1510
>Z81066-8|CAB02974.2| 2396|Caenorhabditis elegans Hypothetical protein
F22G12.5 protein.
Length = 2396
Score = 26.6 bits (56), Expect = 9.5
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +1
Query: 307 APVPARATAPSSLPQLRPP 363
+PVP+ T PS PQ+ PP
Sbjct: 1492 SPVPSTQTTPSRPPQMPPP 1510
>Z71178-2|CAA94875.1| 297|Caenorhabditis elegans Hypothetical
protein B0024.2 protein.
Length = 297
Score = 26.6 bits (56), Expect = 9.5
Identities = 17/53 (32%), Positives = 25/53 (47%)
Frame = -2
Query: 222 EAASGLPAREVERGASSRPEAHGRLDSEQRDQGDHSGPGEAGAGPLHRGPGFA 64
+ ++G P R+ ERG +P GR + ++G PG G L GP A
Sbjct: 231 QGSAGNPGRKGERGQDGQPGPGGR-PGQPGNRGSDGHPGTPGGRGL-PGPDAA 281
>Z47808-12|CAB61003.1| 902|Caenorhabditis elegans Hypothetical
protein C01G6.8b protein.
Length = 902
Score = 26.6 bits (56), Expect = 9.5
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -2
Query: 162 AHGRLDSEQRDQGDHSGPGEAGAGPLHRGPGFAGQEVN 49
AH L G HSG AG P H+ G+ Q+++
Sbjct: 840 AHSILQQHNNRAGSHSGSSGAGRPPTHQ-RGYPSQKLH 876
>Z47808-11|CAD36487.1| 928|Caenorhabditis elegans Hypothetical
protein C01G6.8a protein.
Length = 928
Score = 26.6 bits (56), Expect = 9.5
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -2
Query: 162 AHGRLDSEQRDQGDHSGPGEAGAGPLHRGPGFAGQEVN 49
AH L G HSG AG P H+ G+ Q+++
Sbjct: 866 AHSILQQHNNRAGSHSGSSGAGRPPTHQ-RGYPSQKLH 902
>Z35595-13|CAA84639.2| 902|Caenorhabditis elegans Hypothetical
protein C01G6.8b protein.
Length = 902
Score = 26.6 bits (56), Expect = 9.5
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -2
Query: 162 AHGRLDSEQRDQGDHSGPGEAGAGPLHRGPGFAGQEVN 49
AH L G HSG AG P H+ G+ Q+++
Sbjct: 840 AHSILQQHNNRAGSHSGSSGAGRPPTHQ-RGYPSQKLH 876
>Z35595-12|CAD36478.1| 928|Caenorhabditis elegans Hypothetical
protein C01G6.8a protein.
Length = 928
Score = 26.6 bits (56), Expect = 9.5
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -2
Query: 162 AHGRLDSEQRDQGDHSGPGEAGAGPLHRGPGFAGQEVN 49
AH L G HSG AG P H+ G+ Q+++
Sbjct: 866 AHSILQQHNNRAGSHSGSSGAGRPPTHQ-RGYPSQKLH 902
>Z35595-11|CAJ34992.1| 769|Caenorhabditis elegans Hypothetical
protein C01G6.8c protein.
Length = 769
Score = 26.6 bits (56), Expect = 9.5
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -2
Query: 162 AHGRLDSEQRDQGDHSGPGEAGAGPLHRGPGFAGQEVN 49
AH L G HSG AG P H+ G+ Q+++
Sbjct: 707 AHSILQQHNNRAGSHSGSSGAGRPPTHQ-RGYPSQKLH 743
>U21308-10|AAN65281.1| 329|Caenorhabditis elegans Roller: helically
twisted, animalsroll when moving protein 8, isoform a
protein.
Length = 329
Score = 26.6 bits (56), Expect = 9.5
Identities = 20/55 (36%), Positives = 22/55 (40%)
Frame = -2
Query: 210 GLPAREVERGASSRPEAHGRLDSEQRDQGDHSGPGEAGAGPLHRGPGFAGQEVNG 46
G P R+ +GA P A GRL QG PG G PG GQ G
Sbjct: 231 GRPGRDGMKGA---PGAAGRLIPVPGPQGAPGKPGPIGPPGPKGNPGPDGQSYQG 282
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 26.6 bits (56), Expect = 9.5
Identities = 15/49 (30%), Positives = 19/49 (38%)
Frame = -2
Query: 186 RGASSRPEAHGRLDSEQRDQGDHSGPGEAGAGPLHRGPGFAGQEVNGSE 40
RG SR G + G GP + G + GPG GQ G +
Sbjct: 207 RGGRSRDGQRGGYNGGGGGGGGWGGPAQRGGPGAYGGPGGGGQGGYGGD 255
>AJ132947-1|CAC29085.1| 902|Caenorhabditis elegans receptor
tyrosine kinase protein.
Length = 902
Score = 26.6 bits (56), Expect = 9.5
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -2
Query: 162 AHGRLDSEQRDQGDHSGPGEAGAGPLHRGPGFAGQEVN 49
AH L G HSG AG P H+ G+ Q+++
Sbjct: 840 AHSILQQHNNRAGSHSGSSGAGRPPTHQ-RGYPSQKLH 876
>AJ132946-1|CAC29084.1| 928|Caenorhabditis elegans receptor
tyrosine kinase protein.
Length = 928
Score = 26.6 bits (56), Expect = 9.5
Identities = 13/38 (34%), Positives = 18/38 (47%)
Frame = -2
Query: 162 AHGRLDSEQRDQGDHSGPGEAGAGPLHRGPGFAGQEVN 49
AH L G HSG AG P H+ G+ Q+++
Sbjct: 866 AHSILQQHNNRAGSHSGSSGAGRPPTHQ-RGYPSQKLH 902
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 26.6 bits (56), Expect = 9.5
Identities = 15/49 (30%), Positives = 19/49 (38%)
Frame = -2
Query: 186 RGASSRPEAHGRLDSEQRDQGDHSGPGEAGAGPLHRGPGFAGQEVNGSE 40
RG SR G + G GP + G + GPG GQ G +
Sbjct: 169 RGGRSRDGQRGGYNGGGGGGGGWGGPAQRGGPGAYGGPGGGGQGGYGGD 217
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 26.6 bits (56), Expect = 9.5
Identities = 15/49 (30%), Positives = 19/49 (38%)
Frame = -2
Query: 186 RGASSRPEAHGRLDSEQRDQGDHSGPGEAGAGPLHRGPGFAGQEVNGSE 40
RG SR G + G GP + G + GPG GQ G +
Sbjct: 207 RGGRSRDGQRGGYNGGGGGGGGWGGPAQRGGPGAYGGPGGGGQGGYGGD 255
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,684,520
Number of Sequences: 27780
Number of extensions: 175269
Number of successful extensions: 1059
Number of sequences better than 10.0: 71
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1055
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 903458030
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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