Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0579.Seq
(487 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At3g03510.1 68416.m00349 phototropic-responsive NPH3 family prot... 31 0.31
At5g39810.1 68418.m04822 MADS-box family protein contains simila... 29 1.3
At1g31290.1 68414.m03829 PAZ domain-containing protein / piwi do... 29 1.3
At2g23270.1 68415.m02779 expressed protein ; similar to GP|24648... 29 1.7
At2g09865.1 68415.m01022 hypothetical protein 29 1.7
At1g26620.1 68414.m03242 expressed protein ; expression supporte... 29 1.7
At4g25630.1 68417.m03691 fibrillarin 2 (FIB2) identical to fibri... 29 2.2
At1g58370.1 68414.m06640 glycosyl hydrolase family 10 protein / ... 29 2.2
At5g40120.1 68418.m04867 MADS-box family protein identical to cD... 28 2.9
At5g39750.1 68418.m04815 MADS-box family protein contains Pfam p... 28 2.9
At5g38740.1 68418.m04685 MADS-box family protein contains simila... 28 2.9
At5g65220.1 68418.m08205 ribosomal protein L29 family protein co... 28 3.8
At1g32730.1 68414.m04036 expressed protein 28 3.8
At5g61990.1 68418.m07780 pentatricopeptide (PPR) repeat-containi... 27 5.1
At5g42760.1 68418.m05207 O-methyltransferase N-terminus domain-c... 27 5.1
At5g37720.1 68418.m04541 RNA and export factor-binding protein, ... 27 5.1
At4g34131.1 68417.m04841 UDP-glucoronosyl/UDP-glucosyl transfera... 27 5.1
At4g22940.1 68417.m03312 protein kinase family protein contains ... 27 5.1
At3g30810.1 68416.m03942 hypothetical protein 27 5.1
At1g12430.1 68414.m01436 armadillo/beta-catenin repeat family pr... 27 5.1
At5g40220.1 68418.m04880 MADS-box family protein contains Pfam p... 27 6.7
At5g10530.1 68418.m01219 lectin protein kinase, putative similar... 27 8.9
At3g25840.1 68416.m03219 protein kinase family protein contains ... 27 8.9
At1g24460.1 68414.m03081 myosin-related contains TIGRFAM TIGR016... 27 8.9
>At3g03510.1 68416.m00349 phototropic-responsive NPH3 family protein
contains NPH3 family domain, Pfam:PF03000
Length = 455
Score = 31.5 bits (68), Expect = 0.31
Identities = 18/61 (29%), Positives = 33/61 (54%)
Frame = -1
Query: 466 SSREIRTKVAAWLDKEVEATENEWXEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKK 287
S +IR KVA + VE TEN+ E + + K L+ IE + ++ + + E ++ +K
Sbjct: 358 SQMQIRDKVAREMKGVVERTENQVDEVESMSKKLLKLEIEPDYMKKRKIENLECVVHCEK 417
Query: 286 E 284
+
Sbjct: 418 K 418
>At5g39810.1 68418.m04822 MADS-box family protein contains
similarity to hypothetical proteins of [Arabidopsis
thaliana]
Length = 329
Score = 29.5 bits (63), Expect = 1.3
Identities = 15/28 (53%), Positives = 20/28 (71%)
Frame = +3
Query: 390 SXHSFSVASTSLSNQAATLVRISRELHT 473
S S+S+ASTSLSN+ T+ R + EL T
Sbjct: 17 SSSSYSLASTSLSNRLETIFRKASELCT 44
>At1g31290.1 68414.m03829 PAZ domain-containing protein / piwi
domain-containing protein contains Pfam profiles
PF02170: PAZ domain, PF02171: Piwi domain
Length = 1194
Score = 29.5 bits (63), Expect = 1.3
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Frame = -2
Query: 189 ERGASSRPEAHGRLDSEQRDQG-DHSGPGEAGAGPLHRGPGFAGQ 58
+RG S R + HGR R +G G G G RG G++G+
Sbjct: 40 DRGYSGRGDGHGRGGGGDRGRGYSGRGDGRGRGGGGDRGRGYSGR 84
>At2g23270.1 68415.m02779 expressed protein ; similar to
GP|2464853|gnl|PID|e353149|Z99707
Length = 86
Score = 29.1 bits (62), Expect = 1.7
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -2
Query: 189 ERGASSRPEAHGRLD-SEQRDQGDHSGPGEAGAG 91
E G SS E H +D +E + G HSGP +G G
Sbjct: 52 ESGPSSGGEGHRFVDRTETLEYGKHSGPSTSGPG 85
>At2g09865.1 68415.m01022 hypothetical protein
Length = 339
Score = 29.1 bits (62), Expect = 1.7
Identities = 12/35 (34%), Positives = 16/35 (45%)
Frame = +1
Query: 376 FGSDLRSIRSRSLQLPCPTKRQLWSEFHVSYIHHD 480
F + R R +QLPCP ++ E HHD
Sbjct: 215 FEGEERQTRHHMIQLPCPALTEITGEHEEIGFHHD 249
>At1g26620.1 68414.m03242 expressed protein ; expression supported
by MPSS
Length = 867
Score = 29.1 bits (62), Expect = 1.7
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = -1
Query: 475 GVCSSREIRTKVAAWLDKEVEATENEWXEGRNQTVKALED 356
G SS ++TK W+D E T EG N K E+
Sbjct: 577 GFLSSLSVKTKARTWIDLEAPPTLESEEEGDNSQDKTNEE 616
>At4g25630.1 68417.m03691 fibrillarin 2 (FIB2) identical to
fibrillarin 2 GI:9965655 from [Arabidopsis thaliana]
Length = 320
Score = 28.7 bits (61), Expect = 2.2
Identities = 16/39 (41%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Frame = -3
Query: 362 GGRN*GR--EDGAVARAGTGAPHPGQEGERAPAARGRLR 252
GGR GR D G G P G G R PA RG ++
Sbjct: 37 GGRGGGRGFSDRGGRGRGRGPPRGGARGGRGPAGRGGMK 75
>At1g58370.1 68414.m06640 glycosyl hydrolase family 10 protein /
carbohydrate-binding domain-containing protein similar
to (1,4)-beta-xylan endohydrolase GI:5306060 from
[Triticum aestivum] ; contains Pfam profiles PF00331:
Glycosyl hydrolase family 10, PF02018: Carbohydrate
binding domain
Length = 917
Score = 28.7 bits (61), Expect = 2.2
Identities = 16/47 (34%), Positives = 26/47 (55%)
Frame = -1
Query: 472 VCSSREIRTKVAAWLDKEVEATENEWXEGRNQTVKALEDAIEGEKTE 332
+CSS I T+ + EV+AT +W + NQT L +A++ T+
Sbjct: 630 LCSSNNIETR-GHCIFWEVQATVQQWIQNMNQT--DLNNAVQNRLTD 673
>At5g40120.1 68418.m04867 MADS-box family protein identical to cDNA
GI:32402407 MADS-box protein AGL76
Length = 385
Score = 28.3 bits (60), Expect = 2.9
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = +3
Query: 390 SXHSFSVASTSLSNQAATLVRISRELHT 473
S S+S+ASTSLSN+ T+ + + EL T
Sbjct: 9 SSSSYSLASTSLSNRLETIFKKASELCT 36
>At5g39750.1 68418.m04815 MADS-box family protein contains Pfam
profile PF00319: SRF-type transcription factor
(DNA-binding and dimerisation domain); MADS-box protein
AGL81
Length = 355
Score = 28.3 bits (60), Expect = 2.9
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = +3
Query: 390 SXHSFSVASTSLSNQAATLVRISRELHT 473
S S+S+ASTSLSN+ T+ + + EL T
Sbjct: 17 SSSSYSLASTSLSNRLETIFKKASELCT 44
>At5g38740.1 68418.m04685 MADS-box family protein contains
similarity to hypothetical proteins of [Arabidopsis
thaliana]
Length = 426
Score = 28.3 bits (60), Expect = 2.9
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = +3
Query: 390 SXHSFSVASTSLSNQAATLVRISRELHT 473
S S+S+ASTSLSN+ T+ + + EL T
Sbjct: 18 SSSSYSLASTSLSNRLETIFKKASELCT 45
>At5g65220.1 68418.m08205 ribosomal protein L29 family protein
contains Pfam profile PF00831: ribosomal protein L29
Length = 173
Score = 27.9 bits (59), Expect = 3.8
Identities = 14/37 (37%), Positives = 24/37 (64%)
Frame = +1
Query: 307 APVPARATAPSSLPQLRPPVLSRFGSDLRSIRSRSLQ 417
A VPA AT SS P+ ++S+ ++L+ IRS++ +
Sbjct: 40 ARVPAAATISSSSPKPSVVMMSKREAELKEIRSKTTE 76
>At1g32730.1 68414.m04036 expressed protein
Length = 327
Score = 27.9 bits (59), Expect = 3.8
Identities = 17/62 (27%), Positives = 29/62 (46%)
Frame = -1
Query: 448 TKVAAWLDKEVEATENEWXEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQ 269
TK+ + D+ +E ENE + V LE+A + G Q K+EN++ +
Sbjct: 136 TKLKEYRDRNIEV-ENEAFDRYMSNVNLLEEAFSFTSVPDEESHGTAAPEQNKEENIVSE 194
Query: 268 LE 263
L+
Sbjct: 195 LK 196
>At5g61990.1 68418.m07780 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 974
Score = 27.5 bits (58), Expect = 5.1
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = -1
Query: 370 KALEDAIEGEKTEQWRAQGQELLIQAKKENVLL 272
+A IEG E+ QG ELL++ KK N+++
Sbjct: 383 QAYASLIEGYCREKNVRQGYELLVEMKKRNIVI 415
>At5g42760.1 68418.m05207 O-methyltransferase N-terminus
domain-containing protein contains Pfam profile PF02409:
O-methyltransferase N-terminus
Length = 344
Score = 27.5 bits (58), Expect = 5.1
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 132 HVAHYPVDHVLLGETTLHVRLLELVVQT 215
HV H P+ H+ GET H+R L +QT
Sbjct: 66 HVIHDPLAHLFAGET--HLRNLHTKIQT 91
>At5g37720.1 68418.m04541 RNA and export factor-binding protein,
putative transcriptional coactivator ALY, Mus musculus,
EMBL:MMU89876
Length = 288
Score = 27.5 bits (58), Expect = 5.1
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = -2
Query: 192 VERGASSRPEAHGRLDSEQRDQGDHSGPGEAGAGPLHRGP 73
V+RG ++R G R +G G G GAGP RGP
Sbjct: 13 VKRGKTARSGGRGI----SRGRGRGRGGGGRGAGPARRGP 48
>At4g34131.1 68417.m04841 UDP-glucoronosyl/UDP-glucosyl transferase
family protein contains Pfam profile: PF00201
UDP-glucoronosyl and UDP-glucosyl transferase
Length = 481
Score = 27.5 bits (58), Expect = 5.1
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = -1
Query: 454 IRTKVAAWLDKEVEATENEWXEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAK 290
+RT V+ K V T + R + VKA+ + + GE+ ++ R + ++L AK
Sbjct: 408 LRTGVSVGAKKNVRTTGD--FISREKVVKAVREVLVGEEADERRERAKKLAEMAK 460
>At4g22940.1 68417.m03312 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 458
Score = 27.5 bits (58), Expect = 5.1
Identities = 14/33 (42%), Positives = 18/33 (54%)
Frame = +3
Query: 33 NNVRFRSLPGQRSQVRDAAVQRLLLLVRSDRLG 131
N RF +LP +R D A + LL SD+LG
Sbjct: 21 NRPRFHTLPSERRIANDQAQKVTELLKMSDKLG 53
>At3g30810.1 68416.m03942 hypothetical protein
Length = 791
Score = 27.5 bits (58), Expect = 5.1
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 11/70 (15%)
Frame = -2
Query: 258 PKGEAHVRLH*GEAASGLP--AREVERGASSRPEAHGRLD---------SEQRDQGDHSG 112
P+G A R E+A+ +P A +R +S R GR +++ Q +SG
Sbjct: 333 PEGVASPREERIESAAAIPDAAASADRRSSGRSHGGGRGSRGGGRSSNRTQKVRQTSNSG 392
Query: 111 PGEAGAGPLH 82
G AG+GP H
Sbjct: 393 GGSAGSGPFH 402
>At1g12430.1 68414.m01436 armadillo/beta-catenin repeat family
protein / kinesin motor family protein
Length = 919
Score = 27.5 bits (58), Expect = 5.1
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = -3
Query: 287 GERAPAARGRLRERLMYAYTEVKRRLDYQLEKSNVERRLAQKHMVDWI 144
G+RA ++ + + Y + RRL+ QL+ E QK VD I
Sbjct: 406 GQRAMKVENMVKIKEEFDYKSLSRRLEVQLDNLIEENERQQKAFVDEI 453
>At5g40220.1 68418.m04880 MADS-box family protein contains Pfam
profile PF00319: SRF-type transcription factor
(DNA-binding and dimerisation domain); MADS-box protein
AGL43
Length = 324
Score = 27.1 bits (57), Expect = 6.7
Identities = 13/28 (46%), Positives = 20/28 (71%)
Frame = +3
Query: 390 SXHSFSVASTSLSNQAATLVRISRELHT 473
S ++S+ASTSLSN+ T+ + + EL T
Sbjct: 10 SSSAYSLASTSLSNRLETIFKKASELCT 37
>At5g10530.1 68418.m01219 lectin protein kinase, putative similar to
receptor lectin kinase 3 [Arabidopsis thaliana]
gi|4100060|gb|AAD00733; contains protein kinase domain,
Pfam:PF00069; contains legume lectins alpha and beta
domains, Pfam:PF00138 and Pfam:PF00139
Length = 651
Score = 26.6 bits (56), Expect = 8.9
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = -2
Query: 195 EVERGASSRPEAHGRLDSEQRDQGDHSGPGEAGAGPLHRG 76
++ERGA R + L S + D GE G G ++RG
Sbjct: 313 DLERGAGPRKFTYKDLASAANNFADDRKLGEGGFGAVYRG 352
>At3g25840.1 68416.m03219 protein kinase family protein contains
Pfam profile: PF00069 eukaryotic protein kinase domain
Length = 935
Score = 26.6 bits (56), Expect = 8.9
Identities = 17/45 (37%), Positives = 22/45 (48%)
Frame = -3
Query: 266 RGRLRERLMYAYTEVKRRLDYQLEKSNVERRLAQKHMVDWIVSNV 132
RGR R+R Y E KR + + EK R QK +I S+V
Sbjct: 334 RGRSRDRTRYNSRERKREKEREGEKDWERGRETQKDREKYISSDV 378
>At1g24460.1 68414.m03081 myosin-related contains TIGRFAM TIGR01612:
reticulocyte binding protein; similar to Myosin heavy
chain, non-muscle (Zipper protein) (Myosin II)
(SP:Q99323) {Drosophila melanogaster} similar to EST
gb|T76116
Length = 1730
Score = 26.6 bits (56), Expect = 8.9
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = -1
Query: 421 EVEATENEWXEGRNQTVKALEDAIEGEKTEQWRAQGQELLIQAKKENVLLQLEAA 257
EV+A ++ E + +K +EDA+ + R + +QA KEN L+L+ A
Sbjct: 865 EVDALTSKLAETQT-ALKLVEDALSTAEDNISRLTEENRNVQAAKENAELELQKA 918
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,311,910
Number of Sequences: 28952
Number of extensions: 165301
Number of successful extensions: 760
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 760
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 838967680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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