Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0577.Seq
         (487 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0584 - 9650996-9651488,9651630-9652049,9652129-9652158,965...    29   1.5  
12_01_0861 + 8153108-8153266,8154633-8155136                           28   3.5  
03_06_0307 + 33027012-33027167,33028505-33028615,33028927-330290...    28   3.5  
03_01_0161 + 1307206-1307769,1307979-1308101,1308182-1308286,130...    27   6.0  
02_05_0280 + 27435166-27435254,27436348-27436437,27436764-274368...    27   8.0  

>03_02_0584 -
           9650996-9651488,9651630-9652049,9652129-9652158,
           9652201-9652287,9652657-9653669,9653832-9654854,
           9654946-9654969
          Length = 1029

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 14/45 (31%), Positives = 22/45 (48%)
 Frame = -3

Query: 362 TRDNHGSRRNYHRKLIRQTFERCVAGT*PCDLQKLSDSSKLTTSD 228
           T D+ GS RN  ++    T + C   T   D+Q +SD  ++   D
Sbjct: 586 TSDSMGSGRNLQKEHDSNTHQNCSFVTNKIDMQGISDDKRINVKD 630


>12_01_0861 + 8153108-8153266,8154633-8155136
          Length = 220

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = -1

Query: 475 SSLPPRAGSG*FARLLPSLXVVAVSQAPSPESNP--DSPLPVTTMVVAE 335
           SS  P    G   RL  S  +VA+ + P P S+P  D P   TT+ + E
Sbjct: 99  SSPSPHCQEGHDPRLCVSAGLVAIPRCPPPTSSPSLDPPESSTTVALIE 147


>03_06_0307 +
           33027012-33027167,33028505-33028615,33028927-33029065,
           33029215-33029323,33029422-33029425
          Length = 172

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 12/32 (37%), Positives = 23/32 (71%)
 Frame = +2

Query: 212 RRRASRPKSLILMNRITFADRMVKYRRRIFQM 307
           R+RA+  K++ L N+I   +R+++ RR+I +M
Sbjct: 28  RKRAAAAKTVSLKNQIRSTERLLRKRRKIERM 59


>03_01_0161 +
           1307206-1307769,1307979-1308101,1308182-1308286,
           1308688-1308867,1308988-1309050,1309151-1309345,
           1309704-1309805,1309885-1309947,1310045-1310113,
           1310215-1310270,1310587-1310755
          Length = 562

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 2/69 (2%)
 Frame = -1

Query: 475 SSLPPRAGSG*FARLLPSLXVVAVSQAPSPESNPDSPLPVTTMVVAETTIES**GRHLK- 299
           SS PP   S   +RL  +      S AP P  +  +P P +  V ++  I S  G +L  
Sbjct: 6   SSKPPTPASTPSSRLAAAPSSRVSSAAPHPSPSSSAPTPASRTVYSDRFIPSRAGSNLAL 65

Query: 298 -DASPVLDH 275
            D +P   H
Sbjct: 66  FDLAPSPSH 74


>02_05_0280 +
           27435166-27435254,27436348-27436437,27436764-27436866,
           27437318-27437377,27437745-27439148,27439227-27439328,
           27439424-27439609,27439695-27439820,27439905-27440000,
           27440509-27440574
          Length = 773

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 11/24 (45%), Positives = 19/24 (79%)
 Frame = +2

Query: 149 NTCNQNSDQ*WDECFY*IKTNRRR 220
           N+ N++SDQ   +C+Y +KTNR++
Sbjct: 741 NSLNRSSDQ-ISKCYYSLKTNRKQ 763


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,482,081
Number of Sequences: 37544
Number of extensions: 269055
Number of successful extensions: 696
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)