Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0521.Seq
         (449 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces ...    92   3e-20

>SPCC576.08c |rps2||40S ribosomal protein S2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 253

 Score = 92.3 bits (219), Expect = 3e-20
 Identities = 42/66 (63%), Positives = 53/66 (80%)
 Frame = +3

Query: 252 QEFEIIDFXLGPXLXDEVLKIMPVQKXTRAGQRXRFKAFVAIGXXNGHXGLGVKCSKEVA 431
           +E++I+D+ L P L DEV+K++PVQK TRAGQR RFKAFV IG  +GH GLG+KC+KEVA
Sbjct: 63  KEYQIVDYFL-PRLNDEVMKVVPVQKQTRAGQRTRFKAFVVIGDSDGHVGLGIKCAKEVA 121

Query: 432 XXXRGA 449
              RGA
Sbjct: 122 TAIRGA 127



 Score = 59.7 bits (138), Expect = 2e-10
 Identities = 25/35 (71%), Positives = 31/35 (88%)
 Frame = +1

Query: 151 EDQKEWVPVTKLGRLVREGKIXXLESIYLFSLPIK 255
           +++KEWVPVTKLGRLV+ GKI  +E IYL+SLPIK
Sbjct: 29  DEEKEWVPVTKLGRLVKAGKIKSIEEIYLYSLPIK 63


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,133,352
Number of Sequences: 5004
Number of extensions: 12605
Number of successful extensions: 25
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)