Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0521.Seq
         (449 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0386 + 33555682-33556344,33557138-33557299                       88   3e-18
07_01_0756 + 5819367-5820038,5820847-5821005                           86   1e-17
03_04_0238 - 19219040-19219218,19220296-19220350,19221606-192216...    38   0.003
07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871     27   7.0  

>03_06_0386 + 33555682-33556344,33557138-33557299
          Length = 274

 Score = 88.2 bits (209), Expect = 3e-18
 Identities = 43/66 (65%), Positives = 50/66 (75%)
 Frame = +3

Query: 252 QEFEIIDFXLGPXLXDEVLKIMPVQKXTRAGQRXRFKAFVAIGXXNGHXGLGVKCSKEVA 431
           +E +I++  L P L DEV+KI PVQK TRAGQR RFKAFV +G  NGH GLGVKC+KEVA
Sbjct: 73  KEHQIVE-TLVPGLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDNNGHVGLGVKCAKEVA 131

Query: 432 XXXRGA 449
              RGA
Sbjct: 132 TAIRGA 137



 Score = 54.0 bits (124), Expect = 5e-08
 Identities = 21/35 (60%), Positives = 30/35 (85%)
 Frame = +1

Query: 151 EDQKEWVPVTKLGRLVREGKIXXLESIYLFSLPIK 255
           +++++WVPVTKLGRLV+EG+   +E IYL SLP+K
Sbjct: 39  QEEEKWVPVTKLGRLVKEGRFSKIEEIYLHSLPVK 73


>07_01_0756 + 5819367-5820038,5820847-5821005
          Length = 276

 Score = 86.2 bits (204), Expect = 1e-17
 Identities = 42/66 (63%), Positives = 50/66 (75%)
 Frame = +3

Query: 252 QEFEIIDFXLGPXLXDEVLKIMPVQKXTRAGQRXRFKAFVAIGXXNGHXGLGVKCSKEVA 431
           +E +I++  L P L DEV+KI PVQK TRAGQR RFKAFV +G  +GH GLGVKC+KEVA
Sbjct: 76  KEHQIVE-QLVPGLKDEVMKITPVQKQTRAGQRTRFKAFVVVGDGDGHVGLGVKCAKEVA 134

Query: 432 XXXRGA 449
              RGA
Sbjct: 135 TAIRGA 140



 Score = 54.4 bits (125), Expect = 4e-08
 Identities = 22/35 (62%), Positives = 30/35 (85%)
 Frame = +1

Query: 151 EDQKEWVPVTKLGRLVREGKIXXLESIYLFSLPIK 255
           +++++WVPVTKLGRLV+E KI  +E IYL SLP+K
Sbjct: 42  QEEEKWVPVTKLGRLVKENKIHKIEEIYLHSLPVK 76


>03_04_0238 -
           19219040-19219218,19220296-19220350,19221606-19221690,
           19222068-19222798
          Length = 349

 Score = 38.3 bits (85), Expect = 0.003
 Identities = 16/44 (36%), Positives = 27/44 (61%)
 Frame = +3

Query: 297 DEVLKIMPVQKXTRAGQRXRFKAFVAIGXXNGHXGLGVKCSKEV 428
           + V+++  V K  + G++  F+A V +G   GH G+GV  +KEV
Sbjct: 172 ERVVQVNRVTKVVKGGRQLSFRAIVVVGDMKGHVGVGVGKAKEV 215


>07_03_0099 + 13387533-13387641,13387647-13387864,13388497-13388871
          Length = 233

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 366 FVAIGXXNGHXGLGVKCSK 422
           FV +G  + H  LGVKC+K
Sbjct: 2   FVVVGDGDSHIELGVKCAK 20


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,807,803
Number of Sequences: 37544
Number of extensions: 87017
Number of successful extensions: 161
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 161
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)