Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0521.Seq
         (449 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X69120-1|CAA48872.1|  267|Drosophila melanogaster ribosoaml prot...   107   5e-24
U01335-1|AAA87053.1|  267|Drosophila melanogaster ribosomal prot...   107   5e-24
U01334-1|AAC34198.1|  267|Drosophila melanogaster ribosomal prot...   107   5e-24
AY094799-1|AAM11152.1|  267|Drosophila melanogaster LD24077p pro...   107   5e-24
AE014134-1713|AAF52822.1|  267|Drosophila melanogaster CG5920-PA...   107   5e-24

>X69120-1|CAA48872.1|  267|Drosophila melanogaster ribosoaml protein
           S2 protein.
          Length = 267

 Score =  107 bits (258), Expect = 5e-24
 Identities = 53/66 (80%), Positives = 54/66 (81%)
 Frame = +3

Query: 252 QEFEIIDFXLGPXLXDEVLKIMPVQKXTRAGQRXRFKAFVAIGXXNGHXGLGVKCSKEVA 431
           +EFEIIDF LG  L DEVLKIMPVQK TRAGQR RFKAFVAIG  NGH GLGVKCSKEVA
Sbjct: 72  KEFEIIDFFLGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 131

Query: 432 XXXRGA 449
              RGA
Sbjct: 132 TAIRGA 137



 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 30/35 (85%), Positives = 31/35 (88%)
 Frame = +1

Query: 151 EDQKEWVPVTKLGRLVREGKIXXLESIYLFSLPIK 255
           ED KEWVPVTKLGRLVREGKI  LE IYL+SLPIK
Sbjct: 38  EDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIK 72


>U01335-1|AAA87053.1|  267|Drosophila melanogaster ribosomal protein
           S2 protein.
          Length = 267

 Score =  107 bits (258), Expect = 5e-24
 Identities = 53/66 (80%), Positives = 54/66 (81%)
 Frame = +3

Query: 252 QEFEIIDFXLGPXLXDEVLKIMPVQKXTRAGQRXRFKAFVAIGXXNGHXGLGVKCSKEVA 431
           +EFEIIDF LG  L DEVLKIMPVQK TRAGQR RFKAFVAIG  NGH GLGVKCSKEVA
Sbjct: 72  KEFEIIDFFLGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 131

Query: 432 XXXRGA 449
              RGA
Sbjct: 132 TAIRGA 137



 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 30/35 (85%), Positives = 31/35 (88%)
 Frame = +1

Query: 151 EDQKEWVPVTKLGRLVREGKIXXLESIYLFSLPIK 255
           ED KEWVPVTKLGRLVREGKI  LE IYL+SLPIK
Sbjct: 38  EDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIK 72


>U01334-1|AAC34198.1|  267|Drosophila melanogaster ribosomal protein
           S2 protein.
          Length = 267

 Score =  107 bits (258), Expect = 5e-24
 Identities = 53/66 (80%), Positives = 54/66 (81%)
 Frame = +3

Query: 252 QEFEIIDFXLGPXLXDEVLKIMPVQKXTRAGQRXRFKAFVAIGXXNGHXGLGVKCSKEVA 431
           +EFEIIDF LG  L DEVLKIMPVQK TRAGQR RFKAFVAIG  NGH GLGVKCSKEVA
Sbjct: 72  KEFEIIDFFLGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 131

Query: 432 XXXRGA 449
              RGA
Sbjct: 132 TAIRGA 137



 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 30/35 (85%), Positives = 31/35 (88%)
 Frame = +1

Query: 151 EDQKEWVPVTKLGRLVREGKIXXLESIYLFSLPIK 255
           ED KEWVPVTKLGRLVREGKI  LE IYL+SLPIK
Sbjct: 38  EDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIK 72


>AY094799-1|AAM11152.1|  267|Drosophila melanogaster LD24077p
           protein.
          Length = 267

 Score =  107 bits (258), Expect = 5e-24
 Identities = 53/66 (80%), Positives = 54/66 (81%)
 Frame = +3

Query: 252 QEFEIIDFXLGPXLXDEVLKIMPVQKXTRAGQRXRFKAFVAIGXXNGHXGLGVKCSKEVA 431
           +EFEIIDF LG  L DEVLKIMPVQK TRAGQR RFKAFVAIG  NGH GLGVKCSKEVA
Sbjct: 72  KEFEIIDFFLGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 131

Query: 432 XXXRGA 449
              RGA
Sbjct: 132 TAIRGA 137



 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 30/35 (85%), Positives = 31/35 (88%)
 Frame = +1

Query: 151 EDQKEWVPVTKLGRLVREGKIXXLESIYLFSLPIK 255
           ED KEWVPVTKLGRLVREGKI  LE IYL+SLPIK
Sbjct: 38  EDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIK 72


>AE014134-1713|AAF52822.1|  267|Drosophila melanogaster CG5920-PA
           protein.
          Length = 267

 Score =  107 bits (258), Expect = 5e-24
 Identities = 53/66 (80%), Positives = 54/66 (81%)
 Frame = +3

Query: 252 QEFEIIDFXLGPXLXDEVLKIMPVQKXTRAGQRXRFKAFVAIGXXNGHXGLGVKCSKEVA 431
           +EFEIIDF LG  L DEVLKIMPVQK TRAGQR RFKAFVAIG  NGH GLGVKCSKEVA
Sbjct: 72  KEFEIIDFFLGSSLKDEVLKIMPVQKQTRAGQRTRFKAFVAIGDNNGHIGLGVKCSKEVA 131

Query: 432 XXXRGA 449
              RGA
Sbjct: 132 TAIRGA 137



 Score = 66.1 bits (154), Expect = 2e-11
 Identities = 30/35 (85%), Positives = 31/35 (88%)
 Frame = +1

Query: 151 EDQKEWVPVTKLGRLVREGKIXXLESIYLFSLPIK 255
           ED KEWVPVTKLGRLVREGKI  LE IYL+SLPIK
Sbjct: 38  EDSKEWVPVTKLGRLVREGKIKSLEEIYLYSLPIK 72


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,735,628
Number of Sequences: 53049
Number of extensions: 147580
Number of successful extensions: 211
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 211
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1455824790
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)