Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0521.Seq
         (449 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal prot...    89   1e-18
U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of pr...    27   6.3  

>U42436-10|AAF99899.1|  272|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 2 protein.
          Length = 272

 Score = 89.4 bits (212), Expect = 1e-18
 Identities = 48/66 (72%), Positives = 49/66 (74%)
 Frame = +3

Query: 252 QEFEIIDFXLGPXLXDEVLKIMPVQKXTRAGQRXRFKAFVAIGXXNGHXGLGVKCSKEVA 431
           +EFEIID  L   L DEVLKI PVQK T AGQR RFKAFVAIG   GH GLGVKCSKEVA
Sbjct: 86  KEFEIID-ALCSNLKDEVLKISPVQKQTTAGQRTRFKAFVAIGDHAGHVGLGVKCSKEVA 144

Query: 432 XXXRGA 449
              RGA
Sbjct: 145 TAIRGA 150



 Score = 53.2 bits (122), Expect = 8e-08
 Identities = 25/35 (71%), Positives = 27/35 (77%)
 Frame = +1

Query: 151 EDQKEWVPVTKLGRLVREGKIXXLESIYLFSLPIK 255
           E + EW PVTKLGRLV+E KI  LE IYL SLPIK
Sbjct: 52  EKETEWTPVTKLGRLVKEKKITTLEEIYLNSLPIK 86


>U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of
            presynaptic morphologyprotein 1 protein.
          Length = 3766

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = +3

Query: 153  RPERVGSCHQTRPSCSRRKNRXTREHLLVFFTNQEFEIIDFXLGPXLXDEVLKIMP 320
            RP R G    T+PS SRR  + T    +    + +F  I   LG  L    + ++P
Sbjct: 2145 RPHRAGKGTITKPSGSRRGAQMTVARTVSIPFSSDFSGIRMRLGTTLASTSVGVIP 2200


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,466,004
Number of Sequences: 27780
Number of extensions: 74884
Number of successful extensions: 131
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 131
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)