Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0521.Seq
         (449 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)             102   1e-22
At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S ri...   101   2e-22
At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) simila...   101   2e-22
At1g58983.1 68414.m06666 40S ribosomal protein S2, putative simi...   101   2e-22
At1g58684.1 68414.m06657 40S ribosomal protein S2, putative           101   2e-22
At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) simila...   101   2e-22
At2g33800.1 68415.m04147 ribosomal protein S5 family protein con...    36   0.017

>At2g41840.1 68415.m05171 40S ribosomal protein S2 (RPS2C)
          Length = 285

 Score =  102 bits (245), Expect = 1e-22
 Identities = 47/66 (71%), Positives = 53/66 (80%)
 Frame = +3

Query: 252 QEFEIIDFXLGPXLXDEVLKIMPVQKXTRAGQRXRFKAFVAIGXXNGHXGLGVKCSKEVA 431
           +E++IID  +GP L DEV+KIMPVQK TRAGQR RFKAFV +G  NGH GLGVKCSKEVA
Sbjct: 83  KEYQIIDMLIGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVA 142

Query: 432 XXXRGA 449
              RGA
Sbjct: 143 TAIRGA 148



 Score = 50.0 bits (114), Expect = 7e-07
 Identities = 21/34 (61%), Positives = 27/34 (79%)
 Frame = +1

Query: 154 DQKEWVPVTKLGRLVREGKIXXLESIYLFSLPIK 255
           ++++WVPVTKLGRLV  G I  +E IYL SLP+K
Sbjct: 50  EEEKWVPVTKLGRLVAAGHIKQIEQIYLHSLPVK 83


>At3g57490.1 68416.m06400 40S ribosomal protein S2 (RPS2D) 40S
           ribosomal protein S2 - Arabidopsis thaliana,
           SWISSPROT:RS2_ARATH
          Length = 276

 Score =  101 bits (243), Expect = 2e-22
 Identities = 46/66 (69%), Positives = 53/66 (80%)
 Frame = +3

Query: 252 QEFEIIDFXLGPXLXDEVLKIMPVQKXTRAGQRXRFKAFVAIGXXNGHXGLGVKCSKEVA 431
           +E++IID  +GP L DEV+KIMPVQK TRAGQR RFKAF+ +G  NGH GLGVKCSKEVA
Sbjct: 74  KEYQIIDLLVGPSLKDEVMKIMPVQKQTRAGQRTRFKAFIVVGDSNGHVGLGVKCSKEVA 133

Query: 432 XXXRGA 449
              RGA
Sbjct: 134 TAIRGA 139



 Score = 56.0 bits (129), Expect = 1e-08
 Identities = 23/34 (67%), Positives = 30/34 (88%)
 Frame = +1

Query: 154 DQKEWVPVTKLGRLVREGKIXXLESIYLFSLPIK 255
           ++++WVPVTKLGRLV+EGKI  +E IYL SLP+K
Sbjct: 41  EEEKWVPVTKLGRLVKEGKITKIEQIYLHSLPVK 74


>At1g59359.1 68414.m06677 40S ribosomal protein S2 (RPS2B) similar
           to ribosomal protein S2 GI:430711 from [Drosophila
           melanogaster]
          Length = 284

 Score =  101 bits (243), Expect = 2e-22
 Identities = 47/66 (71%), Positives = 53/66 (80%)
 Frame = +3

Query: 252 QEFEIIDFXLGPXLXDEVLKIMPVQKXTRAGQRXRFKAFVAIGXXNGHXGLGVKCSKEVA 431
           +E++IID  +GP L DEV+KIMPVQK TRAGQR RFKAFV +G  NGH GLGVKCSKEVA
Sbjct: 82  KEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVA 141

Query: 432 XXXRGA 449
              RGA
Sbjct: 142 TAIRGA 147



 Score = 51.2 bits (117), Expect = 3e-07
 Identities = 22/34 (64%), Positives = 27/34 (79%)
 Frame = +1

Query: 154 DQKEWVPVTKLGRLVREGKIXXLESIYLFSLPIK 255
           ++ +WVPVTKLGRLV + KI  LE IYL SLP+K
Sbjct: 49  EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVK 82


>At1g58983.1 68414.m06666 40S ribosomal protein S2, putative similar
           to ribosomal protein S2 GI:939717 from [Urechis caupo]
          Length = 284

 Score =  101 bits (243), Expect = 2e-22
 Identities = 47/66 (71%), Positives = 53/66 (80%)
 Frame = +3

Query: 252 QEFEIIDFXLGPXLXDEVLKIMPVQKXTRAGQRXRFKAFVAIGXXNGHXGLGVKCSKEVA 431
           +E++IID  +GP L DEV+KIMPVQK TRAGQR RFKAFV +G  NGH GLGVKCSKEVA
Sbjct: 82  KEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVA 141

Query: 432 XXXRGA 449
              RGA
Sbjct: 142 TAIRGA 147



 Score = 51.2 bits (117), Expect = 3e-07
 Identities = 22/34 (64%), Positives = 27/34 (79%)
 Frame = +1

Query: 154 DQKEWVPVTKLGRLVREGKIXXLESIYLFSLPIK 255
           ++ +WVPVTKLGRLV + KI  LE IYL SLP+K
Sbjct: 49  EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVK 82


>At1g58684.1 68414.m06657 40S ribosomal protein S2, putative 
          Length = 284

 Score =  101 bits (243), Expect = 2e-22
 Identities = 47/66 (71%), Positives = 53/66 (80%)
 Frame = +3

Query: 252 QEFEIIDFXLGPXLXDEVLKIMPVQKXTRAGQRXRFKAFVAIGXXNGHXGLGVKCSKEVA 431
           +E++IID  +GP L DEV+KIMPVQK TRAGQR RFKAFV +G  NGH GLGVKCSKEVA
Sbjct: 82  KEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVA 141

Query: 432 XXXRGA 449
              RGA
Sbjct: 142 TAIRGA 147



 Score = 51.2 bits (117), Expect = 3e-07
 Identities = 22/34 (64%), Positives = 27/34 (79%)
 Frame = +1

Query: 154 DQKEWVPVTKLGRLVREGKIXXLESIYLFSLPIK 255
           ++ +WVPVTKLGRLV + KI  LE IYL SLP+K
Sbjct: 49  EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVK 82


>At1g58380.1 68414.m06642 40S ribosomal protein S2 (RPS2A) similar
           to ribosomal protein S2 GI:939717 from (Urechis caupo)
          Length = 284

 Score =  101 bits (243), Expect = 2e-22
 Identities = 47/66 (71%), Positives = 53/66 (80%)
 Frame = +3

Query: 252 QEFEIIDFXLGPXLXDEVLKIMPVQKXTRAGQRXRFKAFVAIGXXNGHXGLGVKCSKEVA 431
           +E++IID  +GP L DEV+KIMPVQK TRAGQR RFKAFV +G  NGH GLGVKCSKEVA
Sbjct: 82  KEYQIIDHLVGPTLKDEVMKIMPVQKQTRAGQRTRFKAFVVVGDGNGHVGLGVKCSKEVA 141

Query: 432 XXXRGA 449
              RGA
Sbjct: 142 TAIRGA 147



 Score = 51.2 bits (117), Expect = 3e-07
 Identities = 22/34 (64%), Positives = 27/34 (79%)
 Frame = +1

Query: 154 DQKEWVPVTKLGRLVREGKIXXLESIYLFSLPIK 255
           ++ +WVPVTKLGRLV + KI  LE IYL SLP+K
Sbjct: 49  EETKWVPVTKLGRLVADNKITKLEQIYLHSLPVK 82


>At2g33800.1 68415.m04147 ribosomal protein S5 family protein
           contains Pfam profiles PF03719: Ribosomal protein S5,
           C-terminal domain, PF00333: Ribosomal protein S5,
           N-terminal domain
          Length = 303

 Score = 35.5 bits (78), Expect = 0.017
 Identities = 14/44 (31%), Positives = 27/44 (61%)
 Frame = +3

Query: 297 DEVLKIMPVQKXTRAGQRXRFKAFVAIGXXNGHXGLGVKCSKEV 428
           + V+++  V K  + G++ +F+A V +G   G+ G+G   +KEV
Sbjct: 149 ERVVQVRRVTKVVKGGKQLKFRAIVVVGDKQGNVGVGCAKAKEV 192


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,133,439
Number of Sequences: 28952
Number of extensions: 69839
Number of successful extensions: 111
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)