Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0520.Seq
         (548 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13 pro...    21   5.4  
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   7.1  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    21   9.4  

>DQ659252-1|ABG47450.1|  377|Tribolium castaneum chitinase 13
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = -3

Query: 366 GPIPQLRSHGTTXQGHHFLIA 304
           G  PQ  + G    GHHF+++
Sbjct: 245 GADPQKVTIGIAFYGHHFILS 265


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +2

Query: 107 PVVRVAVEPKNPADLPKLV 163
           PV+R+ V   NP D   L+
Sbjct: 480 PVMRICVSAWNPKDCDPLI 498


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 13/38 (34%), Positives = 16/38 (42%)
 Frame = +3

Query: 291 PXLXXQSRSDDPVVSYRETVAEESDQLCLSKXPNKHNR 404
           P L     S  P  + RET + ESD    S  P+   R
Sbjct: 112 PYLSPLFHSAAPRTASRETKSSESDSGASSADPDDELR 149


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,615
Number of Sequences: 336
Number of extensions: 1900
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 13516233
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)