Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0520.Seq
(548 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_0662 + 30987187-30987277,30987825-30990214 89 2e-18
04_01_0103 + 1082077-1082167,1083037-1085477 89 3e-18
02_04_0017 + 18937774-18937864,18938505-18940945 88 4e-18
01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912 86 2e-17
06_03_0715 - 23823427-23823525,23823616-23823822,23823907-238240... 75 5e-14
03_05_0511 + 25056018-25059107 67 8e-12
02_04_0148 - 20198407-20201424 67 1e-11
04_04_0640 - 26891552-26891725,26891814-26892326,26892698-268936... 46 2e-05
03_05_0044 + 20203644-20204054,20204695-20204916,20205092-202051... 34 0.065
07_03_1042 + 23487326-23487443,23487555-23487957,23488057-234883... 32 0.35
07_03_1219 + 24960043-24960133,24960304-24960336,24962258-249624... 29 2.4
>01_06_0662 + 30987187-30987277,30987825-30990214
Length = 826
Score = 89.4 bits (212), Expect = 2e-18
Identities = 49/84 (58%), Positives = 57/84 (67%), Gaps = 2/84 (2%)
Frame = +2
Query: 41 KTGTIXTXK--NAHNMKVMKXSXXPVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQCIN 214
K T+ K +A +K MK S PVVRVAV+ K +DLPKLVEGLKRLAKSDPMV C
Sbjct: 459 KNATLTNEKEVDACPIKAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVLCTV 518
Query: 215 EESGEHIVVGAGEXILRSXXRXLR 286
EESGEHI+ GAGE L + L+
Sbjct: 519 EESGEHIIAGAGELHLEICLKDLQ 542
Score = 87.4 bits (207), Expect = 7e-18
Identities = 39/68 (57%), Positives = 53/68 (77%)
Frame = +3
Query: 324 PVVSYRETVAEESDQLCLSKXPNKHNRLFMKAQXMPDGLPEDIDEGRVNPRDDFKTRARX 503
PVVS+RETV E+S + +SK PNKHNRL+M+A+ M +GLPE IDEGR+ PRDD K R++
Sbjct: 556 PVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPMEEGLPEAIDEGRIGPRDDPKVRSKI 615
Query: 504 LTKSTEYD 527
L++ +D
Sbjct: 616 LSEEFGWD 623
>04_01_0103 + 1082077-1082167,1083037-1085477
Length = 843
Score = 88.6 bits (210), Expect = 3e-18
Identities = 48/84 (57%), Positives = 56/84 (66%), Gaps = 2/84 (2%)
Frame = +2
Query: 41 KTGTIXTXKNAHN--MKVMKXSXXPVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQCIN 214
K T+ K A ++ MK S PVVRVAV+ K +DLPKLVEGLKRLAKSDPMV C
Sbjct: 463 KNATLTNEKEADACPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVLCTI 522
Query: 215 EESGEHIVVGAGEXILRSXXRXLR 286
EESGEHI+ GAGE L + L+
Sbjct: 523 EESGEHIIAGAGELHLEICLKDLQ 546
Score = 81.8 bits (193), Expect = 3e-16
Identities = 36/68 (52%), Positives = 52/68 (76%)
Frame = +3
Query: 324 PVVSYRETVAEESDQLCLSKXPNKHNRLFMKAQXMPDGLPEDIDEGRVNPRDDFKTRARX 503
PVVS+RETV E+S + +SK PNKHNRL+M+A+ + +GL E ID+GR+ PRDD K R++
Sbjct: 560 PVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKI 619
Query: 504 LTKSTEYD 527
L++ +D
Sbjct: 620 LSEEFGWD 627
>02_04_0017 + 18937774-18937864,18938505-18940945
Length = 843
Score = 88.2 bits (209), Expect = 4e-18
Identities = 48/84 (57%), Positives = 57/84 (67%), Gaps = 2/84 (2%)
Frame = +2
Query: 41 KTGTIXTXK--NAHNMKVMKXSXXPVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQCIN 214
K T+ K +A ++ MK S PVVRVAV+ K +DLPKLVEGLKRLAKSDPMV C
Sbjct: 463 KNATLTNEKESDACPIRAMKFSVSPVVRVAVQCKVASDLPKLVEGLKRLAKSDPMVLCTI 522
Query: 215 EESGEHIVVGAGEXILRSXXRXLR 286
EESGEHI+ GAGE L + L+
Sbjct: 523 EESGEHIIAGAGELHLEICLKDLQ 546
Score = 81.8 bits (193), Expect = 3e-16
Identities = 36/68 (52%), Positives = 52/68 (76%)
Frame = +3
Query: 324 PVVSYRETVAEESDQLCLSKXPNKHNRLFMKAQXMPDGLPEDIDEGRVNPRDDFKTRARX 503
PVVS+RETV E+S + +SK PNKHNRL+M+A+ + +GL E ID+GR+ PRDD K R++
Sbjct: 560 PVVSFRETVLEKSCRTVMSKSPNKHNRLYMEARPLEEGLAEAIDDGRIGPRDDPKVRSKI 619
Query: 504 LTKSTEYD 527
L++ +D
Sbjct: 620 LSEEFGWD 627
>01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912
Length = 853
Score = 86.2 bits (204), Expect = 2e-17
Identities = 44/84 (52%), Positives = 56/84 (66%), Gaps = 2/84 (2%)
Frame = +2
Query: 41 KTGTIXTXK--NAHNMKVMKXSXXPVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQCIN 214
K T+ K +AH +K MK S PVVR +V KN ++LPKLVEGLKRLAKSDP+V C
Sbjct: 465 KNATLTDEKAVDAHPIKAMKFSVSPVVRKSVACKNASELPKLVEGLKRLAKSDPLVVCTI 524
Query: 215 EESGEHIVVGAGEXILRSXXRXLR 286
EESGEH++ G G+ L + L+
Sbjct: 525 EESGEHVIAGVGQLHLEICIKDLQ 548
Score = 61.7 bits (143), Expect = 4e-10
Identities = 30/76 (39%), Positives = 49/76 (64%), Gaps = 8/76 (10%)
Frame = +3
Query: 324 PVVSYRETVAEESDQLCLSKXPNKHNRLFMKAQXM-PDGLPED-------IDEGRVNPRD 479
P+++YRETV + S + +SK PNKHNRL+M+A+ + + L +D ID+ R+ P+D
Sbjct: 562 PIITYRETVTKNSCRTVMSKSPNKHNRLYMEARPLDKEDLQQDEPSLCKAIDDERIGPKD 621
Query: 480 DFKTRARXLTKSTEYD 527
D K R + L++ +D
Sbjct: 622 DIKERGKILSEEFGWD 637
>06_03_0715 -
23823427-23823525,23823616-23823822,23823907-23824017,
23824124-23824322,23824410-23824495,23824940-23825098,
23825204-23825302,23825385-23826578,23826666-23826734,
23828042-23828812
Length = 997
Score = 74.5 bits (175), Expect = 5e-14
Identities = 37/94 (39%), Positives = 57/94 (60%), Gaps = 3/94 (3%)
Frame = +2
Query: 41 KTGTIXTXK---NAHNMKVMKXSXXPVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQCI 211
KT TI K + + + ++ + PVV++A EP NP++LPK+VEGL++++KS P+
Sbjct: 585 KTATICPMKMDEDVYIFRPLRFNTLPVVKIAAEPLNPSELPKMVEGLRKISKSYPLAVTK 644
Query: 212 NEESGEHIVVGAGEXILRSXXRXLRRTMXXXAIK 313
EESGEH ++G GE L S + LR +K
Sbjct: 645 VEESGEHTILGTGELYLDSIMKDLRELYSEVEVK 678
Score = 52.0 bits (119), Expect = 3e-07
Identities = 26/74 (35%), Positives = 40/74 (54%)
Frame = +3
Query: 321 DPVVSYRETVAEESDQLCLSKXPNKHNRLFMKAQXMPDGLPEDIDEGRVNPRDDFKTRAR 500
DPVV++ ETV + S C ++ PNK N++ M A+ + GL EDI+ G V+ K
Sbjct: 681 DPVVTFCETVVDTSSMKCFAETPNKRNKITMVAEPLEKGLAEDIENGLVSLDSRQKEITD 740
Query: 501 XLTKSTEYDVTEXR 542
+ ++DV R
Sbjct: 741 FFRQRYQWDVLAAR 754
>03_05_0511 + 25056018-25059107
Length = 1029
Score = 67.3 bits (157), Expect = 8e-12
Identities = 32/81 (39%), Positives = 47/81 (58%)
Frame = +2
Query: 41 KTGTIXTXKNAHNMKVMKXSXXPVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQCINEE 220
K+ T+ + KN M P+++VA+EP NPADL LV+GLK L ++DP V+ +
Sbjct: 514 KSATLSSTKNCWPFSSMMFQVSPMLKVAIEPSNPADLGALVKGLKLLNRADPFVEYTVSQ 573
Query: 221 SGEHIVVGAGEXILRSXXRXL 283
GEH++ AGE L + L
Sbjct: 574 RGEHVLAAAGEIHLERCKKDL 594
>02_04_0148 - 20198407-20201424
Length = 1005
Score = 66.9 bits (156), Expect = 1e-11
Identities = 31/82 (37%), Positives = 47/82 (57%)
Frame = +2
Query: 41 KTGTIXTXKNAHNMKVMKXSXXPVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQCINEE 220
K T+ + KN M P+++VA+EP NP+DL LV+GLK L ++DP ++ E
Sbjct: 494 KNATLSSTKNCQPFSGMMFQVSPMLKVAIEPSNPSDLGALVKGLKLLNQADPFIEYTVSE 553
Query: 221 SGEHIVVGAGEXILRSXXRXLR 286
GEH++ AGE L + L+
Sbjct: 554 RGEHVLAAAGEIHLEHCIKNLQ 575
>04_04_0640 -
26891552-26891725,26891814-26892326,26892698-26893644,
26893778-26894114,26894413-26894462,26895020-26895248
Length = 749
Score = 46.4 bits (105), Expect = 2e-05
Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Frame = +2
Query: 107 PVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQ-CINEESGEHIVVGAGEXILRSXXRXL 283
PV++VA+EPK AD K+ GL +LA+ DP +EE+ + ++ G GE L L
Sbjct: 457 PVIKVAIEPKTKADADKMATGLIKLAQEDPSFHFSRDEETNQTVIEGMGELHLDIIVDRL 516
Query: 284 RR 289
+R
Sbjct: 517 KR 518
>03_05_0044 +
20203644-20204054,20204695-20204916,20205092-20205130,
20206275-20206396,20206489-20206639,20207892-20207963,
20208256-20208351,20208861-20208949,20209068-20209134,
20210197-20210235,20210369-20210429,20210572-20210681,
20210766-20210840,20210914-20210982,20213126-20213247,
20214682-20214807,20214897-20215017,20215133-20215233,
20215564-20215624,20216560-20216613,20217585-20217689
Length = 770
Score = 34.3 bits (75), Expect = 0.065
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +2
Query: 107 PVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQC-INEESGEHIVVGAGEXILRSXXRXL 283
PV+ +AV P + + + L R K DP + ++ ESGE I+ G GE L +
Sbjct: 477 PVMSLAVSPISKDSGGQFSKALNRFQKEDPTFRVGLDPESGETIISGMGELHLDIYVERI 536
Query: 284 RR 289
RR
Sbjct: 537 RR 538
>07_03_1042 +
23487326-23487443,23487555-23487957,23488057-23488397,
23488621-23489660
Length = 633
Score = 31.9 bits (69), Expect = 0.35
Identities = 14/47 (29%), Positives = 21/47 (44%)
Frame = -3
Query: 249 PAPTTMCSPDSSLIHCTMGSDLARRLRPSTSXGRSAGFLGSTATRTT 109
P+P+ D S C GS + + P+T+ AG S T +T
Sbjct: 342 PSPSEAIGTDGSSTSCGTGSSVTNAIAPATTTSTFAGLFASVTTSST 388
>07_03_1219 +
24960043-24960133,24960304-24960336,24962258-24962486,
24963183-24963309,24963530-24963869,24964806-24965095
Length = 369
Score = 29.1 bits (62), Expect = 2.4
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +3
Query: 357 ESDQLCLSKXPNKHNRLFMKAQXMPDGLPE 446
E + LCL PN+H + + A+ +P LPE
Sbjct: 42 EKENLCLYGFPNEHWEVNLPAEEVPPELPE 71
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,521,166
Number of Sequences: 37544
Number of extensions: 212895
Number of successful extensions: 502
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 500
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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