Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0520.Seq
(548 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 122 2e-28
SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.) 70 1e-12
SB_24031| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.62
SB_30916| Best HMM Match : C2 (HMM E-Value=1.2e-17) 29 2.5
SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0) 29 2.5
SB_23706| Best HMM Match : Extensin_2 (HMM E-Value=0.1) 29 2.5
SB_26912| Best HMM Match : C2 (HMM E-Value=1.4e-17) 28 5.8
SB_58863| Best HMM Match : Fibrinogen_BP (HMM E-Value=2) 27 7.6
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 122 bits (294), Expect = 2e-28
Identities = 62/94 (65%), Positives = 67/94 (71%)
Frame = +2
Query: 35 LGKTGTIXTXKNAHNMKVMKXSXXPVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQCIN 214
L KTGTI T ++ HNMK+MK S PVVRVAVEPKNPADLPKLVEGL RLAKSDPMVQ
Sbjct: 453 LVKTGTISTYEHCHNMKMMKFSVSPVVRVAVEPKNPADLPKLVEGLNRLAKSDPMVQSFT 512
Query: 215 EESGEHIVVGAGEXILRSXXRXLRRTMXXXAIKK 316
EESGEHIV GAGE L + L +KK
Sbjct: 513 EESGEHIVAGAGELHLEICLKDLEEDHACIPLKK 546
Score = 99 bits (238), Expect = 1e-21
Identities = 46/79 (58%), Positives = 59/79 (74%), Gaps = 1/79 (1%)
Frame = +3
Query: 312 RSDDPVVSYRETVAEESDQLCLSKXPNKHNRLFMKAQXMPDGLPEDIDEG-RVNPRDDFK 488
+ +PVVSYRE V+++S+Q+CLSK PNKHNRLFM A + + LPEDID+G +NPR DFK
Sbjct: 545 KKSEPVVSYRECVSDKSNQMCLSKSPNKHNRLFMTAGPLEEKLPEDIDDGCEINPRQDFK 604
Query: 489 TRARXLTKSTEYDVTEXRK 545
RAR L + +DV E RK
Sbjct: 605 IRARYLADTYGWDVNEARK 623
>SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 809
Score = 69.7 bits (163), Expect = 1e-12
Identities = 35/94 (37%), Positives = 56/94 (59%), Gaps = 3/94 (3%)
Frame = +2
Query: 41 KTGTIXTXKN---AHNMKVMKXSXXPVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQCI 211
KT TI + A+ + +K + +++AVEP NP++LPK+++GL+++ KS P++
Sbjct: 429 KTATITEVQGSEEAYIFRPLKFNTCSTIKIAVEPHNPSELPKMLDGLRKVNKSYPLLTTK 488
Query: 212 NEESGEHIVVGAGEXILRSXXRXLRRTMXXXAIK 313
EESGEH+++G GE L LRR IK
Sbjct: 489 VEESGEHVILGTGELYLDCIMHDLRRMYSEIDIK 522
Score = 48.4 bits (110), Expect = 4e-06
Identities = 21/49 (42%), Positives = 32/49 (65%)
Frame = +3
Query: 321 DPVVSYRETVAEESDQLCLSKXPNKHNRLFMKAQXMPDGLPEDIDEGRV 467
DPV+++ ETV E S C ++ PNK N++ M A+ + GL EDI+ +V
Sbjct: 525 DPVIAFCETVVETSSLKCFAETPNKKNKVTMIAEPLEKGLAEDIENEKV 573
>SB_24031| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1176
Score = 31.1 bits (67), Expect = 0.62
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Frame = +3
Query: 336 YRETVAEESDQLCLSKXPNKHNRLFMKAQXMPDGLP--EDIDEGRVNPRDDFKTRARXLT 509
Y+E + +E++ L + N+H+ + AQ P GL I+E + N R FK +
Sbjct: 225 YKENIEKEAEALRKQQLENRHSLISSNAQYHPQGLETYPSINEYKKNSRMVFKALLSKAS 284
Query: 510 KSTE 521
K +
Sbjct: 285 KDLD 288
>SB_30916| Best HMM Match : C2 (HMM E-Value=1.2e-17)
Length = 809
Score = 29.1 bits (62), Expect = 2.5
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +3
Query: 336 YRETVAEESDQLCLSKXPNKHN--RLFMKAQXMPDGLPEDIDEGRVNPRD 479
Y+ + L K N H+ LF K + +P L ED++EG V D
Sbjct: 230 YKSISTRRELYMLLLKRLNLHHLMSLFCKTKKLPVALSEDLEEGEVTEED 279
>SB_33401| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
Length = 4277
Score = 29.1 bits (62), Expect = 2.5
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = -3
Query: 192 SDLARRLRPSTSXGRSAGFLGSTATRTTGXXLNFITFMLWAFXKV 58
S+ RR +P T GR+ FLG+ + R T NF+ F+ F ++
Sbjct: 1690 SNDGRRFKPYTQFGRTKVFLGN-SDRNTVVGHNFLPFIKARFIRI 1733
>SB_23706| Best HMM Match : Extensin_2 (HMM E-Value=0.1)
Length = 1021
Score = 29.1 bits (62), Expect = 2.5
Identities = 15/46 (32%), Positives = 20/46 (43%)
Frame = +3
Query: 357 ESDQLCLSKXPNKHNRLFMKAQXMPDGLPEDIDEGRVNPRDDFKTR 494
E D+ CL + P + M P+ D GR PRDD K +
Sbjct: 51 EGDEPCLMEKPREPRNNDMNTTHYGGKTPDPRDGGRDGPRDDEKQK 96
>SB_26912| Best HMM Match : C2 (HMM E-Value=1.4e-17)
Length = 232
Score = 27.9 bits (59), Expect = 5.8
Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
Frame = +3
Query: 330 VSYRETVAEESDQLCLS-KXPNKHN--RLFMKAQXMPDGLPEDIDEGRVNPRD 479
V +R + +D L+ + N H+ LF K + +P L ED++EG V D
Sbjct: 29 VKFRYVILNINDFAFLNNRRLNLHHLMSLFCKTKKLPVALSEDLEEGEVTEED 81
>SB_58863| Best HMM Match : Fibrinogen_BP (HMM E-Value=2)
Length = 1037
Score = 27.5 bits (58), Expect = 7.6
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Frame = +3
Query: 378 SKXPNKHNRLFMKAQXMPDGLPEDIDEGRVNPRDDFKT-----RARXLTKSTE 521
S + L A+ +P +P D D GR NP+ + RA+ LT+S E
Sbjct: 633 SSRAQRRRSLAHSARSLPGSMPSDRDLGRKNPQGRSPSAPPIPRAKALTRSQE 685
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,229,719
Number of Sequences: 59808
Number of extensions: 240828
Number of successful extensions: 535
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 466
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1264269032
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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