Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0520.Seq
(548 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 125 2e-29
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 125 2e-29
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 64 6e-11
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 64 6e-11
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 38 0.004
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 35 0.044
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 35 0.044
Z95310-1|CAB08561.1| 444|Caenorhabditis elegans Hypothetical pr... 29 2.2
AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical ... 29 2.2
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 125 bits (302), Expect = 2e-29
Identities = 64/94 (68%), Positives = 69/94 (73%)
Frame = +2
Query: 35 LGKTGTIXTXKNAHNMKVMKXSXXPVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQCIN 214
L K GTI T K+AHNM+VMK S PVVRVAVE KNPADLPKLVEGLKRLAKSDPMVQCI
Sbjct: 473 LVKGGTITTYKDAHNMRVMKFSVSPVVRVAVEAKNPADLPKLVEGLKRLAKSDPMVQCIF 532
Query: 215 EESGEHIVVGAGEXILRSXXRXLRRTMXXXAIKK 316
EESGEHI+ GAGE L + L +KK
Sbjct: 533 EESGEHIIAGAGELHLEICLKDLEEDHACIPLKK 566
Score = 111 bits (267), Expect = 3e-25
Identities = 51/78 (65%), Positives = 59/78 (75%)
Frame = +3
Query: 312 RSDDPVVSYRETVAEESDQLCLSKXPNKHNRLFMKAQXMPDGLPEDIDEGRVNPRDDFKT 491
+ DPVVSYRETV ES+Q+CLSK PNKHNRL AQ MPDGL +DI+ G VN RD+FK
Sbjct: 565 KKSDPVVSYRETVQSESNQICLSKSPNKHNRLHCTAQPMPDGLADDIEGGTVNARDEFKA 624
Query: 492 RARXLTKSTEYDVTEXRK 545
RA+ L + EYDVTE RK
Sbjct: 625 RAKILAEKYEYDVTEARK 642
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 125 bits (302), Expect = 2e-29
Identities = 64/94 (68%), Positives = 69/94 (73%)
Frame = +2
Query: 35 LGKTGTIXTXKNAHNMKVMKXSXXPVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQCIN 214
L K GTI T K+AHNM+VMK S PVVRVAVE KNPADLPKLVEGLKRLAKSDPMVQCI
Sbjct: 473 LVKGGTITTYKDAHNMRVMKFSVSPVVRVAVEAKNPADLPKLVEGLKRLAKSDPMVQCIF 532
Query: 215 EESGEHIVVGAGEXILRSXXRXLRRTMXXXAIKK 316
EESGEHI+ GAGE L + L +KK
Sbjct: 533 EESGEHIIAGAGELHLEICLKDLEEDHACIPLKK 566
Score = 102 bits (245), Expect = 1e-22
Identities = 48/78 (61%), Positives = 57/78 (73%)
Frame = +3
Query: 312 RSDDPVVSYRETVAEESDQLCLSKXPNKHNRLFMKAQXMPDGLPEDIDEGRVNPRDDFKT 491
+ DPVVSYRETV ES+Q+CLSK PNKHNRL AQ MPDGL +DI+ G V+ RD+FK
Sbjct: 565 KKSDPVVSYRETVQSESNQICLSKSPNKHNRLHCTAQPMPDGLADDIEGGTVSARDEFKA 624
Query: 492 RARXLTKSTEYDVTEXRK 545
RA+ + EY VTE RK
Sbjct: 625 RAKYPGEKYEYAVTEARK 642
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 64.1 bits (149), Expect = 6e-11
Identities = 32/94 (34%), Positives = 56/94 (59%), Gaps = 3/94 (3%)
Frame = +2
Query: 41 KTGTIXTX---KNAHNMKVMKXSXXPVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQCI 211
KT TI ++ + + +K + V++AVEP NP++LPK+++GL+++ KS P++
Sbjct: 565 KTATIAELGYEEDVYIFRPLKFNTRSCVKLAVEPINPSELPKMLDGLRKVNKSYPLLTTR 624
Query: 212 NEESGEHIVVGAGEXILRSXXRXLRRTMXXXAIK 313
EESGEH+++G GE + +R+ IK
Sbjct: 625 VEESGEHVLLGTGEFYMDCVMHDMRKVFSEIDIK 658
Score = 45.6 bits (103), Expect = 2e-05
Identities = 20/45 (44%), Positives = 29/45 (64%)
Frame = +3
Query: 321 DPVVSYRETVAEESDQLCLSKXPNKHNRLFMKAQXMPDGLPEDID 455
DPVV++ ETV E S C ++ PNK N++ M A+ + L EDI+
Sbjct: 661 DPVVTFNETVIETSTLKCFAETPNKKNKITMMAEPLEKQLDEDIE 705
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 64.1 bits (149), Expect = 6e-11
Identities = 32/94 (34%), Positives = 56/94 (59%), Gaps = 3/94 (3%)
Frame = +2
Query: 41 KTGTIXTX---KNAHNMKVMKXSXXPVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQCI 211
KT TI ++ + + +K + V++AVEP NP++LPK+++GL+++ KS P++
Sbjct: 440 KTATIAELGYEEDVYIFRPLKFNTRSCVKLAVEPINPSELPKMLDGLRKVNKSYPLLTTR 499
Query: 212 NEESGEHIVVGAGEXILRSXXRXLRRTMXXXAIK 313
EESGEH+++G GE + +R+ IK
Sbjct: 500 VEESGEHVLLGTGEFYMDCVMHDMRKVFSEIDIK 533
Score = 45.6 bits (103), Expect = 2e-05
Identities = 20/45 (44%), Positives = 29/45 (64%)
Frame = +3
Query: 321 DPVVSYRETVAEESDQLCLSKXPNKHNRLFMKAQXMPDGLPEDID 455
DPVV++ ETV E S C ++ PNK N++ M A+ + L EDI+
Sbjct: 536 DPVVTFNETVIETSTLKCFAETPNKKNKITMMAEPLEKQLDEDIE 580
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 38.3 bits (85), Expect = 0.004
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +2
Query: 107 PVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQC-INEESGEHIVVGAGE 253
PV+ +A++P N D ++ L R K DP + N+E+ E IV G GE
Sbjct: 446 PVISMAIKPVNRKDADNFIKALTRFTKEDPTFRREYNQEAKETIVSGMGE 495
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 34.7 bits (76), Expect = 0.044
Identities = 21/68 (30%), Positives = 36/68 (52%)
Frame = +2
Query: 80 MKVMKXSXXPVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQCINEESGEHIVVGAGEXI 259
+K+ + +VRV++ + D+ L E LK LA D ++ + E+GE +V AGE
Sbjct: 467 LKIGSQTGEALVRVSISTQQLDDMDDLREKLKLLALLDTSLKVMELENGELAMVTAGEVH 526
Query: 260 LRSXXRXL 283
L+ + L
Sbjct: 527 LQKCIKDL 534
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical
protein K10C3.5a protein.
Length = 894
Score = 34.7 bits (76), Expect = 0.044
Identities = 21/68 (30%), Positives = 36/68 (52%)
Frame = +2
Query: 80 MKVMKXSXXPVVRVAVEPKNPADLPKLVEGLKRLAKSDPMVQCINEESGEHIVVGAGEXI 259
+K+ + +VRV++ + D+ L E LK LA D ++ + E+GE +V AGE
Sbjct: 467 LKIGSQTGEALVRVSISTQQLDDMDDLREKLKLLALLDTSLKVMELENGELAMVTAGEVH 526
Query: 260 LRSXXRXL 283
L+ + L
Sbjct: 527 LQKCIKDL 534
>Z95310-1|CAB08561.1| 444|Caenorhabditis elegans Hypothetical
protein H40L08.1 protein.
Length = 444
Score = 29.1 bits (62), Expect = 2.2
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = -3
Query: 204 CTMGSDLARRLRPSTSXGRS 145
C MGS+ A+RLRP + GRS
Sbjct: 202 CVMGSEDAQRLRPDRAFGRS 221
>AC024798-8|AAK29921.3| 1115|Caenorhabditis elegans Hypothetical
protein Y48G9A.4 protein.
Length = 1115
Score = 29.1 bits (62), Expect = 2.2
Identities = 14/25 (56%), Positives = 15/25 (60%)
Frame = -3
Query: 168 PSTSXGRSAGFLGSTATRTTGXXLN 94
PSTS G AGFL STA + G N
Sbjct: 142 PSTSSGLPAGFLNSTANSSVGANNN 166
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,256,588
Number of Sequences: 27780
Number of extensions: 170427
Number of successful extensions: 386
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 372
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 384
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1113119490
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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