BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= msgV0519.Seq (548 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schi... 42 5e-05 SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M... 37 0.002 SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF... 34 0.016 SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145 |Schizo... 31 0.15 SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 30 0.20 SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb... 30 0.26 SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces po... 29 0.45 SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 29 0.45 SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|c... 29 0.45 SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha... 29 0.60 SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ... 28 1.0 SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces pomb... 28 1.0 SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 27 1.4 SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces po... 27 1.4 SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa... 27 1.8 SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyc... 27 1.8 SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces p... 27 1.8 SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc... 27 1.8 SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomy... 27 1.8 SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 27 1.8 SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom... 27 1.8 SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|... 27 1.8 SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce... 27 2.4 SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pomb... 27 2.4 SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto... 26 3.2 SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit... 26 3.2 SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo... 26 3.2 SPBC13G1.09 |||bystin-family protein|Schizosaccharomyces pombe|c... 26 3.2 SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc... 26 3.2 SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protei... 26 3.2 SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb... 26 3.2 SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces ... 26 3.2 SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces... 26 4.2 SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|... 26 4.2 SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po... 26 4.2 SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ... 26 4.2 SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyce... 26 4.2 SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr ... 25 5.6 SPCC4F11.02 |ptc1||protein phosphatase 2C Ptc1|Schizosaccharomyc... 25 5.6 SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2 |Schizosacc... 25 5.6 SPCC1919.03c |||AMP-activated protein kinase beta subunit |Schiz... 25 5.6 SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|c... 25 5.6 SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 5.6 SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosacch... 25 5.6 SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr... 25 7.3 SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 25 7.3 SPAC664.08c |||traub transciption factor family protein |Schizos... 25 7.3 SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces p... 25 9.7 SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosa... 25 9.7 SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy... 25 9.7 SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyc... 25 9.7 SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pom... 25 9.7 SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizos... 25 9.7 >SPBC1711.05 |||nucleocytoplasmic transport chaperone Srp40 |Schizosaccharomyces pombe|chr 2|||Manual Length = 451 Score = 42.3 bits (95), Expect = 5e-05 Identities = 28/74 (37%), Positives = 41/74 (55%), Gaps = 1/74 (1%) Frame = -3 Query: 246 DGSKSGVTVEREKS-ESNKKSREFENKEAESSTYRDKNRSVNSGSERKSSGKDEEYSEQN 70 D S S + E E S E N S + E+ESS+ + S +S SE +SS KD + + Sbjct: 217 DSSSSSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSKDSD----S 272 Query: 69 SSNKSFNDGDASAD 28 SSN S ++ D+S+D Sbjct: 273 SSNSSDSEDDSSSD 286 Score = 35.5 bits (78), Expect = 0.005 Identities = 26/83 (31%), Positives = 43/83 (51%), Gaps = 7/83 (8%) Frame = -3 Query: 258 DSKRDGSKSGVTVEREKSES----NKKSREFENKEAESSTYRDKNRSVNSGSERKSSGKD 91 +S +GS S + +SES N S + E+ESS+ + S +S SE +SS + Sbjct: 156 ESSSEGSDSSSSSSSSESESSSEDNDSSSSSSDSESESSSEDSDSSSSSSDSESESSSEG 215 Query: 90 EEYSEQNSSNK---SFNDGDASA 31 + S +SS++ S D D+S+ Sbjct: 216 SDSSSSSSSSESESSSEDNDSSS 238 Score = 28.3 bits (60), Expect = 0.79 Identities = 21/87 (24%), Positives = 37/87 (42%), Gaps = 1/87 (1%) Frame = -3 Query: 264 NEDSKRDGSKSGVTVEREKSESNKKSREFENKEAESSTYRDKNRSVNS-GSERKSSGKDE 88 +E S D + + + + S S++ N + +S S NS SE +S KDE Sbjct: 292 SESSSEDSDSTSSSSDSDSSSSSEDGNS--NTDTTTSGEVSAQSSTNSTSSEESTSVKDE 349 Query: 87 EYSEQNSSNKSFNDGDASADYQTKSKK 7 + S+ + + D + TKS + Sbjct: 350 DSSKIHDKSLKRKHEDDESSTSTKSSR 376 >SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||Manual Length = 500 Score = 37.1 bits (82), Expect = 0.002 Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 2/88 (2%) Frame = -3 Query: 267 RNEDSKRDGSKSGVTVEREKSESNKKSREFENKEAESSTYRDKNRSVNSGSER--KSSGK 94 + + K++ S S E SES S E E+ +ES + ++ S S E K+ K Sbjct: 74 QKKSKKKEESSSESESESSSSESESSSSESESSSSESESSSSESSSSESEEEVIVKTEEK 133 Query: 93 DEEYSEQNSSNKSFNDGDASADYQTKSK 10 E SE +SS++S + +A + K + Sbjct: 134 KESSSESSSSSESEEEEEAVVKIEEKKE 161 Score = 36.3 bits (80), Expect = 0.003 Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 4/77 (5%) Frame = -3 Query: 228 VTVEREKSESNKKSREFENKEAES---STYRDKNRSVNSGSERKSSGKDEEYSE-QNSSN 61 V +E +K S+ S E + E+ES S+ ++ V +E K G E S+ ++SS+ Sbjct: 154 VKIEEKKESSSDSSSESSSSESESESSSSESEEEEEVVEKTEEKKEGSSESSSDSESSSD 213 Query: 60 KSFNDGDASADYQTKSK 10 S GD+ + ++S+ Sbjct: 214 SSSESGDSDSSSDSESE 230 Score = 32.3 bits (70), Expect = 0.048 Identities = 22/90 (24%), Positives = 35/90 (38%), Gaps = 2/90 (2%) Frame = -3 Query: 264 NEDSKRDGSKSGVTVEREKSESNKKSREFENKEAESSTYRDKNRSVNSGSERKSS--GKD 91 +E S + S E SES S E + E+E S SE SS ++ Sbjct: 89 SESSSSESESSSSESESSSSESESSSSESSSSESEEEVIVKTEEKKESSSESSSSSESEE 148 Query: 90 EEYSEQNSSNKSFNDGDASADYQTKSKKVE 1 EE + K + D+S++ + + E Sbjct: 149 EEEAVVKIEEKKESSSDSSSESSSSESESE 178 >SPAC4A8.16c |tif33|SPAC823.01c|translation initiation factor eIF3c|Schizosaccharomyces pombe|chr 1|||Manual Length = 918 Score = 33.9 bits (74), Expect = 0.016 Identities = 18/90 (20%), Positives = 41/90 (45%) Frame = -3 Query: 270 IRNEDSKRDGSKSGVTVEREKSESNKKSREFENKEAESSTYRDKNRSVNSGSERKSSGKD 91 ++ +D +S SES E E++E+E + K + + SE S + Sbjct: 30 LKKQDDSSSEEESSEEESASSSESESSEEESESEESEVEVPKKKAVAASEDSESDSESSE 89 Query: 90 EEYSEQNSSNKSFNDGDASADYQTKSKKVE 1 EE ++ + +D ++ ++ +++S+ E Sbjct: 90 EEEETESEEDSEVSD-ESESESESESESEE 118 Score = 27.5 bits (58), Expect = 1.4 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 1/53 (1%) Frame = -3 Query: 207 SESNKKSREFENKE-AESSTYRDKNRSVNSGSERKSSGKDEEYSEQNSSNKSF 52 SES+++ E E++E +E S + S SE +S ++E + S SF Sbjct: 85 SESSEEEEETESEEDSEVSDESESESESESESEEESESEEESDESERSGPSSF 137 Score = 27.1 bits (57), Expect = 1.8 Identities = 13/58 (22%), Positives = 28/58 (48%) Frame = -3 Query: 174 NKEAESSTYRDKNRSVNSGSERKSSGKDEEYSEQNSSNKSFNDGDASADYQTKSKKVE 1 + +AES ++NR +S +++ EE S + S S + + +++ +VE Sbjct: 11 DSDAESVDSSEENRLTSSRLKKQDDSSSEEESSEEESASSSESESSEEESESEESEVE 68 >SPAC22F8.10c |sap145||U2 snRNP-associated protein Sap145 |Schizosaccharomyces pombe|chr 1|||Manual Length = 601 Score = 30.7 bits (66), Expect = 0.15 Identities = 20/71 (28%), Positives = 36/71 (50%) Frame = -3 Query: 222 VEREKSESNKKSREFENKEAESSTYRDKNRSVNSGSERKSSGKDEEYSEQNSSNKSFNDG 43 +ER + NKKSR +E + R+K S +E+ S KD+ +N+ N +ND Sbjct: 34 LERNNKQKNKKSRNQVRRE-KKKLLREKTNSGAKLAEKNSDDKDQ--LTENNDNL-YNDK 89 Query: 42 DASADYQTKSK 10 ++ ++ +K Sbjct: 90 KSNGNFYDTNK 100 >SPCC645.12c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||Manual Length = 198 Score = 30.3 bits (65), Expect = 0.20 Identities = 17/67 (25%), Positives = 31/67 (46%) Frame = -3 Query: 219 EREKSESNKKSREFENKEAESSTYRDKNRSVNSGSERKSSGKDEEYSEQNSSNKSFNDGD 40 E E ++++ + ++ E S + + +++ K +S + SSN S ND D Sbjct: 127 ENEIADNDLEPEVYDILYEEESKLGESRDLIRRLKQKRFETKKNNFSVKESSNLSNNDSD 186 Query: 39 ASADYQT 19 AS D T Sbjct: 187 ASLDEDT 193 >SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 736 Score = 29.9 bits (64), Expect = 0.26 Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 11/89 (12%) Frame = -3 Query: 255 SKRDGSKSGVTVEREKSESNKKSREFENKEAESSTY-----RDKNRSVNSGSERKSSGKD 91 SKR S GV ++EK +S S E ESS++ +D + + S + S ++ Sbjct: 8 SKRANSNVGVEKDKEKEKSKGVSNVPNEVETESSSHEPSFKKDVDEEIPSLTAELSEEEE 67 Query: 90 EEYSEQNS------SNKSFNDGDASADYQ 22 EYS ++ S F D D +++ Sbjct: 68 GEYSSESGRSTPELSPDDFEDADDEEEFE 96 >SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces pombe|chr 2|||Manual Length = 380 Score = 29.1 bits (62), Expect = 0.45 Identities = 20/79 (25%), Positives = 42/79 (53%), Gaps = 5/79 (6%) Frame = -3 Query: 273 IIRNEDSKRDGSKSGVTVEREKSESNKKSREFENKEAESST-----YRDKNRSVNSGSER 109 +IR S+ S VE+++S ++ S ++ + + ++ Y D + S +S E+ Sbjct: 239 LIRLTRSRARSSNEASYVEKDESSNSDDSISYKRRRSRNAANRITDYVDSDLSESSMKEK 298 Query: 108 KSSGKDEEYSEQNSSNKSF 52 +S K E+Y + + S+K+F Sbjct: 299 QS--KIEKYMKSDKSSKNF 315 >SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosaccharomyces pombe|chr 1|||Manual Length = 1628 Score = 29.1 bits (62), Expect = 0.45 Identities = 21/74 (28%), Positives = 33/74 (44%) Frame = -3 Query: 249 RDGSKSGVTVEREKSESNKKSREFENKEAESSTYRDKNRSVNSGSERKSSGKDEEYSEQN 70 R + + V RE+S +NK E + +DKN+ + E +S ++ S Sbjct: 1484 RVSNNNSTNVSRERSSEANHRTSNDNKRDEVTEGKDKNKRQDISGE-SNSRQNNAISRAG 1542 Query: 69 SSNKSFNDGDASAD 28 SN S N G+ S D Sbjct: 1543 RSNGS-NRGNDSRD 1555 >SPBC19C7.10 |||transcription factor |Schizosaccharomyces pombe|chr 2|||Manual Length = 432 Score = 29.1 bits (62), Expect = 0.45 Identities = 19/67 (28%), Positives = 32/67 (47%) Frame = -3 Query: 261 EDSKRDGSKSGVTVEREKSESNKKSREFENKEAESSTYRDKNRSVNSGSERKSSGKDEEY 82 E+ K S+ T + KSE KK E + +E SST + S + + S+ KD+ Sbjct: 199 EEDKEIHSEENETKDEIKSE--KKEPEIKKQEGGSSTEKVGQPSSSDDKAKGSTSKDQPS 256 Query: 81 SEQNSSN 61 E+ ++ Sbjct: 257 EEEEKTS 263 >SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccharomyces pombe|chr 2|||Manual Length = 474 Score = 28.7 bits (61), Expect = 0.60 Identities = 17/80 (21%), Positives = 39/80 (48%) Frame = -3 Query: 297 IFRDRNQ*IIRNEDSKRDGSKSGVTVEREKSESNKKSREFENKEAESSTYRDKNRSVNSG 118 ++ + N+ + + ++ S T E E E +KS E + + + +R++ G Sbjct: 15 LYGEENEKKVESASGNQETSNVTPTKENEGYEELEKSGEAGAERTKENPFREE-----PG 69 Query: 117 SERKSSGKDEEYSEQNSSNK 58 ++ SG D++YS + +N+ Sbjct: 70 ADFDRSGSDQQYSAEAEANQ 89 >SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces pombe|chr 2|||Manual Length = 599 Score = 27.9 bits (59), Expect = 1.0 Identities = 27/103 (26%), Positives = 47/103 (45%), Gaps = 18/103 (17%) Frame = -3 Query: 264 NEDSKRDGSKSGVTVERE---KSE---------------SNKKSREFENKEAESSTYRDK 139 NEDS D S S V+ E+E K E S E + E+E+ T + Sbjct: 308 NEDSVNDDSSSDVSDEKETEAKHEIRAPAIIVRETSSHPSTAVPSENDTTESENDTLSES 367 Query: 138 NRSVNSGSERKSSGKDEEYSEQNSSNKSFNDGDASADYQTKSK 10 + + S S ++S ++ ++ +S NKS + + SA + +S+ Sbjct: 368 STTSISSSPSENSDTSDDLTKVDSPNKSLVNDNVSAKHDKESE 410 >SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces pombe|chr 1|||Manual Length = 461 Score = 27.9 bits (59), Expect = 1.0 Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 2/68 (2%) Frame = -3 Query: 213 EKSESNKKSREFENKEAESSTYRDKNRSVNSGSERKSSGKDEEYSEQN--SSNKSFNDGD 40 EK++S S E E AE+S DKN +E ++ DE+ Q+ +N N D Sbjct: 175 EKTKS-PISNENEKSAAETSIKEDKNGDAAKKNEGSANQDDEKLHSQSLVGNNCEVNSED 233 Query: 39 ASADYQTK 16 +D +++ Sbjct: 234 EFSDLESE 241 >SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizosaccharomyces pombe|chr 1|||Manual Length = 1604 Score = 27.5 bits (58), Expect = 1.4 Identities = 26/94 (27%), Positives = 41/94 (43%), Gaps = 8/94 (8%) Frame = -3 Query: 264 NEDSKRDGS----KSGVTVEREKSESNK---KSREFENKEAESSTYRDKNRSVNSGSERK 106 NED K D S S T + +E+N K++ + S DK+R+ S K Sbjct: 440 NEDLKDDLSLADLSSKKTANSQATENNNTPSKAKVKAESKVRSKAKSDKSRAKLSSDTNK 499 Query: 105 SSGKDEEYSEQNSSNKSFNDGDASADYQ-TKSKK 7 S K++ S +DG++S + TK+ K Sbjct: 500 DSEKNDNNDASLQSAGVASDGESSPETPLTKASK 533 >SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces pombe|chr 2|||Manual Length = 381 Score = 27.5 bits (58), Expect = 1.4 Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 3/59 (5%) Frame = -3 Query: 219 EREKSESNKKSREFEN---KEAESSTYRDKNRSVNSGSERKSSGKDEEYSEQNSSNKSF 52 +R++ K RE+ + K+ + Y D S S +K S + + Y+E+ + ++S+ Sbjct: 317 KRDRDPDRTKYREYHSERRKQHRTDRYSDDYYQGRSYSYKKRSHRSDRYTERENPDRSY 375 >SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosaccharomyces pombe|chr 2|||Manual Length = 548 Score = 27.1 bits (57), Expect = 1.8 Identities = 16/42 (38%), Positives = 28/42 (66%), Gaps = 1/42 (2%) Frame = -2 Query: 331 VTKIEERILTINIPRQEPINHQKRRQQA*WLE-ERRHSRKGK 209 +T I ER+ ++ + +QE IN K+R +A LE E+ H+ +G+ Sbjct: 278 LTSIRERLESLILEKQEEINFWKQRCRA--LETEKIHNHQGQ 317 >SPAC29E6.10c ||SPAC30.14c|kinetochore protein |Schizosaccharomyces pombe|chr 1|||Manual Length = 1085 Score = 27.1 bits (57), Expect = 1.8 Identities = 14/53 (26%), Positives = 23/53 (43%) Frame = -3 Query: 252 KRDGSKSGVTVEREKSESNKKSREFENKEAESSTYRDKNRSVNSGSERKSSGK 94 KR+ K +ER+K E +K +E E K + D+ + R+ K Sbjct: 647 KREQEKKQQELERQKREEKQKQKEREKKLKKQQQEADREKMAREQRLREEEEK 699 >SPAC1952.02 |||ribosome biogenesis protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 202 Score = 27.1 bits (57), Expect = 1.8 Identities = 16/56 (28%), Positives = 26/56 (46%) Frame = -3 Query: 261 EDSKRDGSKSGVTVEREKSESNKKSREFENKEAESSTYRDKNRSVNSGSERKSSGK 94 E SKR+ SK + +K + KKS+ + ++ + + K R S KS K Sbjct: 137 ESSKREKSKKKKEKKEKKDKLKKKSKRLKLDDSHTQKRKRKVRDKESKKSSKSGLK 192 >SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosaccharomyces pombe|chr 1|||Manual Length = 745 Score = 27.1 bits (57), Expect = 1.8 Identities = 21/87 (24%), Positives = 38/87 (43%), Gaps = 1/87 (1%) Frame = -3 Query: 270 IRNEDSKRDGSKSGVTVEREKSESNKKSREFENKE-AESSTYRDKNRSVNSGSERKSSGK 94 + +++ KRD + + R K + EF E +ESS + + S E Sbjct: 644 LSSDNFKRDFGDTNA-INRPKFVGQQTLEEFYASETSESSEGEYETSTSESEDEETDDTS 702 Query: 93 DEEYSEQNSSNKSFNDGDASADYQTKS 13 EE +E+NS+ + + ++ TKS Sbjct: 703 QEEDNEKNSTPDEDTENNNTSSISTKS 729 >SPCC285.11 |ucp10||UBA/UAS domain protein Ucp10|Schizosaccharomyces pombe|chr 3|||Manual Length = 427 Score = 27.1 bits (57), Expect = 1.8 Identities = 13/48 (27%), Positives = 26/48 (54%) Frame = -3 Query: 219 EREKSESNKKSREFENKEAESSTYRDKNRSVNSGSERKSSGKDEEYSE 76 ERE E+ ++ R ++ ++S RD+ R + +E + K++E E Sbjct: 253 EREAREAARELRRQQDNAYQASLARDRERQAFARAEEERLAKEKEERE 300 >SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizosaccharomyces pombe|chr 1|||Manual Length = 1403 Score = 27.1 bits (57), Expect = 1.8 Identities = 15/68 (22%), Positives = 29/68 (42%) Frame = -3 Query: 261 EDSKRDGSKSGVTVEREKSESNKKSREFENKEAESSTYRDKNRSVNSGSERKSSGKDEEY 82 E +KR+ ++ EK + + E E DKN + S + SS + + Sbjct: 671 EKAKREAEENAKREAEEKVKRETEENAKRKAEEEGKREADKNPEIKSSAPLASSEANVDT 730 Query: 81 SEQNSSNK 58 S+Q ++ + Sbjct: 731 SKQTNATE 738 >SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharomyces pombe|chr 2|||Manual Length = 436 Score = 27.1 bits (57), Expect = 1.8 Identities = 13/34 (38%), Positives = 22/34 (64%) Frame = -2 Query: 289 RQEPINHQKRRQQA*WLEERRHSRKGKIRIQQEK 188 ++E IN KRR++ RRHS+KG + ++E+ Sbjct: 398 KREEINSLKRREE----NIRRHSKKGAVPYEKER 427 >SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr 1|||Manual Length = 534 Score = 27.1 bits (57), Expect = 1.8 Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 1/59 (1%) Frame = -3 Query: 291 RDRNQ*IIRNEDSKRDGSKSGVTVEREKSESNKKSREFENKEAESSTYRDKN-RSVNSG 118 RDR + S+RD +SG RE S +K + + S RD +S +SG Sbjct: 16 RDRRSRFTEDSYSRRDSQRSGNEAPRE-SRYYRKEEHLQERSRSRSPARDSRWKSSSSG 73 >SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 642 Score = 26.6 bits (56), Expect = 2.4 Identities = 17/76 (22%), Positives = 30/76 (39%) Frame = -3 Query: 258 DSKRDGSKSGVTVEREKSESNKKSREFENKEAESSTYRDKNRSVNSGSERKSSGKDEEYS 79 D K+D S + E S E + AES D+ S + ++S + ++ Sbjct: 58 DKKKDSSLNESEDEDFAGFGESASENDELESAESEAENDEESSSQKSNSKESHAQRKKLQ 117 Query: 78 EQNSSNKSFNDGDASA 31 ++ + K F D A Sbjct: 118 KERKAMKPFADTSLKA 133 >SPAC23G3.06 |||U3 snoRNP protein Nop58 |Schizosaccharomyces pombe|chr 1|||Manual Length = 508 Score = 26.6 bits (56), Expect = 2.4 Identities = 20/82 (24%), Positives = 36/82 (43%) Frame = -3 Query: 273 IIRNEDSKRDGSKSGVTVEREKSESNKKSREFENKEAESSTYRDKNRSVNSGSERKSSGK 94 + ++ + ++ + + +E++K KKS + + + ESS K + +KS K Sbjct: 434 VTKDAEESQEDVEMDIVIEKKK----KKSSKLKEADGESSKKEKKEK--KDKKHKKSKRK 487 Query: 93 DEEYSEQNSSNKSFNDGDASAD 28 EE SE S K S D Sbjct: 488 SEE-SEDGESPKKKKKSKKSKD 508 >SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor Sec74|Schizosaccharomyces pombe|chr 1|||Manual Length = 928 Score = 26.2 bits (55), Expect = 3.2 Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 4/87 (4%) Frame = -3 Query: 261 EDSKRDGSKSGVTVEREKSESNKKSREF----ENKEAESSTYRDKNRSVNSGSERKSSGK 94 ++S R S S + E ++K S + K A S KNR S + + Sbjct: 2 DESSRIASSSALHGLDEMVSAHKPSPPLPSRRKGKSALRSALEKKNRKSKSKPKVTITSD 61 Query: 93 DEEYSEQNSSNKSFNDGDASADYQTKS 13 + S Q+S S GD++ D +KS Sbjct: 62 TPKVSSQHSPVSSAYTGDSTTDLDSKS 88 >SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity factor complex subunit Ysh1|Schizosaccharomyces pombe|chr 1|||Manual Length = 775 Score = 26.2 bits (55), Expect = 3.2 Identities = 13/53 (24%), Positives = 26/53 (49%) Frame = -3 Query: 213 EKSESNKKSREFENKEAESSTYRDKNRSVNSGSERKSSGKDEEYSEQNSSNKS 55 E S+++ +FEN+E++ ++ + + K+ K E EQ S K+ Sbjct: 714 EASQNDVSEDDFENEESDDDKIFEQQTKIE--DDVKNENKTEPVEEQKSEEKN 764 >SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharomyces pombe|chr 1|||Manual Length = 860 Score = 26.2 bits (55), Expect = 3.2 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 3/68 (4%) Frame = -3 Query: 240 SKSGVTVEREKSE--SNKKSREFENKEAESSTYRDKNRSVNSGSERKSSGKDEE-YSEQN 70 SK + ++ E+S+ S + + + ++S D+N + + SE K DEE SE Sbjct: 733 SKPQLEMDEEESDFDSEEMDKAMTDMGSDSEQSADENDNESMASEEKPMFSDEENLSEIA 792 Query: 69 SSNKSFND 46 S F+D Sbjct: 793 HSEDEFDD 800 >SPBC13G1.09 |||bystin-family protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 449 Score = 26.2 bits (55), Expect = 3.2 Identities = 17/67 (25%), Positives = 31/67 (46%), Gaps = 1/67 (1%) Frame = -3 Query: 273 IIRNEDSKRDGSKSGVTVEREKSESNKKSREFENKEAESSTYRDKNRSVN-SGSERKSSG 97 + R + + D ++G + SN ++ A S+Y + + N S SE +S Sbjct: 58 LAREQKEELDEEENGKPSQISAFISNGHQKDTLENPAIESSYEESEHARNVSDSESITSQ 117 Query: 96 KDEEYSE 76 ++EEY E Sbjct: 118 EEEEYEE 124 >SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces pombe|chr 2|||Manual Length = 987 Score = 26.2 bits (55), Expect = 3.2 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 2/35 (5%) Frame = -3 Query: 189 SREFENKEAESSTYRDKN--RSVNSGSERKSSGKD 91 ++EFENK + ++T +D R N G+ R S D Sbjct: 520 TKEFENKFSNANTAKDDEPARQTNKGTTRISRSSD 554 >SPBC582.06c |mcp6|hrs1, mug3|meiosis specific coiled-coil protein Mcp6|Schizosaccharomyces pombe|chr 2|||Manual Length = 327 Score = 26.2 bits (55), Expect = 3.2 Identities = 10/40 (25%), Positives = 24/40 (60%) Frame = -3 Query: 252 KRDGSKSGVTVEREKSESNKKSREFENKEAESSTYRDKNR 133 +RD ++ + +E +S+ ++ R+ N++ S T R+K + Sbjct: 69 ERDSTQRTLQIESLESKIGEQERDLNNEKLASETLREKTQ 108 >SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pombe|chr 2|||Manual Length = 497 Score = 26.2 bits (55), Expect = 3.2 Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 2/69 (2%) Frame = -3 Query: 207 SESNKKSREFENKEAESSTYRDKNRSVNSGSER--KSSGKDEEYSEQNSSNKSFNDGDAS 34 +E+ +K+ N + + D +V + SE+ K KD++ ++ S K + DAS Sbjct: 425 AEAYEKALSSVNIDGDEEVDIDVEETVETISEKPSKKEKKDKKEKKKEKSKKKRSADDAS 484 Query: 33 ADYQTKSKK 7 + + KK Sbjct: 485 EEVKKSKKK 493 >SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 325 Score = 26.2 bits (55), Expect = 3.2 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 2/63 (3%) Frame = -3 Query: 246 DGSKSGVTVE-REKSESNKKSREFE-NKEAESSTYRDKNRSVNSGSERKSSGKDEEYSEQ 73 D K +VE R+K +S+ + + ++ + S+Y S S G++E+YS Sbjct: 77 DTKKGFNSVESRKKEQSDVRGGDTSYSRRHDDSSYSSNKYSTGGNDSYSSGGRNEDYSTS 136 Query: 72 NSS 64 S Sbjct: 137 GGS 139 >SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces pombe|chr 2|||Manual Length = 1485 Score = 25.8 bits (54), Expect = 4.2 Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 4/57 (7%) Frame = -3 Query: 222 VEREKSESNKKSREFEN----KEAESSTYRDKNRSVNSGSERKSSGKDEEYSEQNSS 64 ++RE E + SR+F N K ST K R++ +GS ++ K E SE S Sbjct: 1209 IQREMLEEEQSSRDFVNRTKKKPRGKSTGTRKPRAI-AGSSSSTAVKKEASSESKPS 1264 >SPCC63.14 |||conserved fungal protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 1184 Score = 25.8 bits (54), Expect = 4.2 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%) Frame = -3 Query: 219 EREKSESNKKSREFENKEAESSTYRDKNRSVNSGSERKSSGKDEE-YSEQNSS 64 ER S SN+K E+ ST+ + R+++ DE+ + EQ +S Sbjct: 929 ERAHSYSNRKQASSESSPESQSTHYNDYEGTEDNIVRQTTTVDEDGHQEQTTS 981 >SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 284 Score = 25.8 bits (54), Expect = 4.2 Identities = 18/86 (20%), Positives = 38/86 (44%) Frame = -3 Query: 264 NEDSKRDGSKSGVTVEREKSESNKKSREFENKEAESSTYRDKNRSVNSGSERKSSGKDEE 85 +ED + + S +REK + + ++ + K + S K E+ + K +E Sbjct: 149 DEDRVCEDASSSDEAKREKRKKHSSKKKSKKKTSTGSALDPKK------LEKITKKKKKE 202 Query: 84 YSEQNSSNKSFNDGDASADYQTKSKK 7 + +++ + S S+D + K KK Sbjct: 203 HKKKDKESSSKKRKSGSSDKEEKKKK 228 >SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase Its3|Schizosaccharomyces pombe|chr 1|||Manual Length = 742 Score = 25.8 bits (54), Expect = 4.2 Identities = 17/47 (36%), Positives = 21/47 (44%) Frame = -3 Query: 159 SSTYRDKNRSVNSGSERKSSGKDEEYSEQNSSNKSFNDGDASADYQT 19 SS +RS S S++ YSE+NSSN G S D T Sbjct: 166 SSQQPPNDRSTLSSSQKAKRPLKRSYSEKNSSNAE-PSGSRSGDRGT 211 >SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 389 Score = 25.8 bits (54), Expect = 4.2 Identities = 15/62 (24%), Positives = 29/62 (46%), Gaps = 1/62 (1%) Frame = -3 Query: 222 VEREKSESNKKSREFENKEA-ESSTYRDKNRSVNSGSERKSSGKDEEYSEQNSSNKSFND 46 V + K E ++ E A + ++++ +V E K KD++ SSNK+ + Sbjct: 318 VHKSKEEIKQQDNFHEQSRALKEKRKKEQDENVRRKRENKKRRKDQKKEGITSSNKNDDS 377 Query: 45 GD 40 G+ Sbjct: 378 GN 379 >SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 266 Score = 25.4 bits (53), Expect = 5.6 Identities = 12/58 (20%), Positives = 29/58 (50%) Frame = -3 Query: 219 EREKSESNKKSREFENKEAESSTYRDKNRSVNSGSERKSSGKDEEYSEQNSSNKSFND 46 ++++ KK +++ + ++ RS + S+ K DE+ E ++NK+ +D Sbjct: 38 KKKRKNRKKKKNNGPSEQFVGNNDLEEQRSGSIDSKDKEKPLDEKVKELENANKTLSD 95 >SPCC4F11.02 |ptc1||protein phosphatase 2C Ptc1|Schizosaccharomyces pombe|chr 3|||Manual Length = 347 Score = 25.4 bits (53), Expect = 5.6 Identities = 15/47 (31%), Positives = 23/47 (48%) Frame = -3 Query: 141 KNRSVNSGSERKSSGKDEEYSEQNSSNKSFNDGDASADYQTKSKKVE 1 K N+GS + K +SE ++S N D SAD +T+ +E Sbjct: 2 KGSHPNAGSLLEPLHKLNPFSENSTSGHRKNASDHSADGETRPIAIE 48 >SPBC685.04c |aps2||AP-2 adaptor complex subunit Aps2 |Schizosaccharomyces pombe|chr 2|||Manual Length = 143 Score = 25.4 bits (53), Expect = 5.6 Identities = 9/17 (52%), Positives = 12/17 (70%) Frame = +2 Query: 278 WFLSRNIYRQYPFLYFC 328 W S+ +YR+Y LYFC Sbjct: 53 WENSKLVYRRYAGLYFC 69 >SPCC1919.03c |||AMP-activated protein kinase beta subunit |Schizosaccharomyces pombe|chr 3|||Manual Length = 298 Score = 25.4 bits (53), Expect = 5.6 Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 1/43 (2%) Frame = -1 Query: 335 DSDKNRGKDTDDKYSETGTNKSSETKTASVMAR-RAASQSKGK 210 D G+ +DD E G N++S+ T+ + SQ+ GK Sbjct: 46 DDLNQEGEMSDDNQQEGGNNRTSQNGTSGSSGHTKRRSQTSGK 88 >SPBC1685.14c |||Vid27 family protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 801 Score = 25.4 bits (53), Expect = 5.6 Identities = 14/47 (29%), Positives = 23/47 (48%) Frame = -3 Query: 177 ENKEAESSTYRDKNRSVNSGSERKSSGKDEEYSEQNSSNKSFNDGDA 37 E++E E S + R + + +DEE S+ S F+DG+A Sbjct: 373 EDEELEDSEDEEFARQQLLSRKEEEEEEDEEASDFEDSFADFSDGEA 419 >SPAC1527.03 |||RNA-binding protein|Schizosaccharomyces pombe|chr 1|||Manual Length = 475 Score = 25.4 bits (53), Expect = 5.6 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 4/53 (7%) Frame = -3 Query: 147 RDKNRSVNSGSERKSSGKDE-EYSEQNSSNKSFN---DGDASADYQTKSKKVE 1 R +RS N GS R +G+ YS S+ + N + DAS + + E Sbjct: 162 RKSSRSRNDGSRRNGNGRRRGNYSSHGSNKRQTNYSREKDASRSIDSSNPSAE 214 >SPBC32H8.13c |mok12||alpha-1,3-glucan synthase Mok12|Schizosaccharomyces pombe|chr 2|||Manual Length = 2352 Score = 25.4 bits (53), Expect = 5.6 Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 4/29 (13%) Frame = +2 Query: 251 LLSSFLMIYWFLSRNIYRQY----PFLYF 325 + S F + +WFLSR + +Y PF +F Sbjct: 1976 IFSFFSLFWWFLSRVVQARYILSLPFFFF 2004 >SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr 2|||Manual Length = 568 Score = 25.0 bits (52), Expect = 7.3 Identities = 23/97 (23%), Positives = 38/97 (39%) Frame = -3 Query: 297 IFRDRNQ*IIRNEDSKRDGSKSGVTVEREKSESNKKSREFENKEAESSTYRDKNRSVNSG 118 IF + + DS + ++ EK + S K A+S+ D +S Sbjct: 168 IFFPNKEYLWTGSDSLTPLTSEAISQFLEKPKPKTASLIKAYKMAQSTPDLDSLSVPSSE 227 Query: 117 SERKSSGKDEEYSEQNSSNKSFNDGDASADYQTKSKK 7 SE D+E SE + + +ND A + +KK Sbjct: 228 SEVSEEESDQEMSEPSPIEEDYNDTKARRITRKGTKK 264 >SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr 3|||Manual Length = 547 Score = 25.0 bits (52), Expect = 7.3 Identities = 16/54 (29%), Positives = 27/54 (50%) Frame = -3 Query: 219 EREKSESNKKSREFENKEAESSTYRDKNRSVNSGSERKSSGKDEEYSEQNSSNK 58 EREK ESN S + E+ + ++T S N+ S+ + ++ Y + S K Sbjct: 45 EREKVESNPNSSDEEDLTSTNNT----RSSDNTTSDTEDDSGEDSYQVEWESGK 94 >SPAC664.08c |||traub transciption factor family protein |Schizosaccharomyces pombe|chr 1|||Manual Length = 452 Score = 25.0 bits (52), Expect = 7.3 Identities = 14/59 (23%), Positives = 25/59 (42%) Frame = -3 Query: 237 KSGVTVEREKSESNKKSREFENKEAESSTYRDKNRSVNSGSERKSSGKDEEYSEQNSSN 61 K T +E S + + + E + D+N +V+ E SS + SE+N + Sbjct: 70 KGRKTSRQELLNSGSLNSQSSSPSEEEDSEEDENDAVSEDHENFSSSEASSISEENEDD 128 >SPAC9.04 |Tf2-1||retrotransposable element|Schizosaccharomyces pombe|chr 1|||Manual Length = 1333 Score = 24.6 bits (51), Expect = 9.7 Identities = 13/44 (29%), Positives = 20/44 (45%) Frame = -3 Query: 192 KSREFENKEAESSTYRDKNRSVNSGSERKSSGKDEEYSEQNSSN 61 K + +NK + KN + NS + RK++ EYS N Sbjct: 202 KRFQLQNKNLGKESLSKKNNTTNSRNLRKTNVSRIEYSSNKFLN 245 >SPBC9B6.02c |Tf2-9|SPBC9B6.02|retrotransposable element|Schizosaccharomyces pombe|chr 2|||Manual Length = 1333 Score = 24.6 bits (51), Expect = 9.7 Identities = 13/44 (29%), Positives = 20/44 (45%) Frame = -3 Query: 192 KSREFENKEAESSTYRDKNRSVNSGSERKSSGKDEEYSEQNSSN 61 K + +NK + KN + NS + RK++ EYS N Sbjct: 202 KRFQLQNKNLGKESLSKKNNTTNSRNLRKTNVSRIEYSSNKFLN 245 >SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces pombe|chr 1|||Manual Length = 620 Score = 24.6 bits (51), Expect = 9.7 Identities = 17/71 (23%), Positives = 33/71 (46%), Gaps = 1/71 (1%) Frame = -3 Query: 222 VEREKSESNKKSREFENKEAESSTYRDKNRSVNSGSERKSSGKDEEYSEQNSSNKSFN-D 46 +E EK E+N + N+E E+++ +S S + + E E+N+ N + Sbjct: 437 LEDEKEENNTAAESLINQE-ETTSGEAVTKSTVESSANEEEAEPNEIIEENAVKSLLNQE 495 Query: 45 GDASADYQTKS 13 G A+ + K+ Sbjct: 496 GPATNEEVEKN 506 >SPAC26A3.13c |Tf2-4||retrotransposable element|Schizosaccharomyces pombe|chr 1|||Manual Length = 1333 Score = 24.6 bits (51), Expect = 9.7 Identities = 13/44 (29%), Positives = 20/44 (45%) Frame = -3 Query: 192 KSREFENKEAESSTYRDKNRSVNSGSERKSSGKDEEYSEQNSSN 61 K + +NK + KN + NS + RK++ EYS N Sbjct: 202 KRFQLQNKNLGKESLSKKNNTTNSRNLRKTNVSRIEYSSNKFLN 245 >SPBC16E9.02c |||CUE domain protein Cue5 |Schizosaccharomyces pombe|chr 2|||Manual Length = 569 Score = 24.6 bits (51), Expect = 9.7 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 4/46 (8%) Frame = -1 Query: 341 SDDSDKNRGKDTDDKYSETGTN----KSSETKTASVMARRAASQSK 216 +D +K K+T+DK ET + K+ ET + V + + SK Sbjct: 469 NDKDEKTDSKETEDKVEETESKEADVKAKETDSIEVDDKEEKTDSK 514 >SPAC167.08 |Tf2-2|SPAC1705.01c|retrotransposable element|Schizosaccharomyces pombe|chr 1|||Manual Length = 1333 Score = 24.6 bits (51), Expect = 9.7 Identities = 13/44 (29%), Positives = 20/44 (45%) Frame = -3 Query: 192 KSREFENKEAESSTYRDKNRSVNSGSERKSSGKDEEYSEQNSSN 61 K + +NK + KN + NS + RK++ EYS N Sbjct: 202 KRFQLQNKNLGKESLSKKNNTTNSRNLRKTNVSRIEYSSNKFLN 245 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,509,877 Number of Sequences: 5004 Number of extensions: 24991 Number of successful extensions: 225 Number of sequences better than 10.0: 53 Number of HSP's better than 10.0 without gapping: 199 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 220 length of database: 2,362,478 effective HSP length: 69 effective length of database: 2,017,202 effective search space used: 227943826 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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