Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0518.Seq
         (598 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory recept...    24   0.85 
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   2.0  
AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    21   6.0  
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    21   6.0  

>AM292372-1|CAL23184.2|  771|Tribolium castaneum gustatory receptor
           candidate 51 protein.
          Length = 771

 Score = 24.2 bits (50), Expect = 0.85
 Identities = 15/49 (30%), Positives = 28/49 (57%)
 Frame = -2

Query: 549 PTXRRCLYACLLTASPVSWSLYIFVKFSVLK*LWVXSXVC*TDVVVTFS 403
           P+  +C YACLL    + W +Y +++   LK ++  S +C T+ +  F+
Sbjct: 41  PSLAKC-YACLLMVVKILWVIY-WLQDDALKSVYA-SLLC-TEKIFLFA 85


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 23.0 bits (47), Expect = 2.0
 Identities = 9/38 (23%), Positives = 16/38 (42%)
 Frame = -1

Query: 568 RWXPNHSNX*KMLVCMSANCQPRLMEPVYLCEIQCPEV 455
           +W P+      +L CM   C P   +   +  +QC  +
Sbjct: 48  QWIPDLGVPIGVLYCMKCECVPLQKKRRIVARVQCRSI 85


>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = -1

Query: 517 ANCQPRLMEPVYLCEIQCPE 458
           ANC P L   +  C  +CP+
Sbjct: 717 ANCSPDLYAVMLNCWKECPK 736


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 6/14 (42%), Positives = 9/14 (64%)
 Frame = +2

Query: 362 LHNEHRCTCHLGLF 403
           +H  H+CTC  G +
Sbjct: 356 IHAGHKCTCPEGFY 369


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,965
Number of Sequences: 336
Number of extensions: 2587
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15039504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)