Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0518.Seq
(598 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0017 + 18937774-18937864,18938505-18940945 124 5e-29
04_01_0103 + 1082077-1082167,1083037-1085477 124 7e-29
01_06_0662 + 30987187-30987277,30987825-30990214 116 1e-26
01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912 98 4e-21
06_03_0715 - 23823427-23823525,23823616-23823822,23823907-238240... 96 2e-20
03_05_0511 + 25056018-25059107 74 8e-14
02_04_0148 - 20198407-20201424 65 5e-11
04_04_0640 - 26891552-26891725,26891814-26892326,26892698-268936... 48 4e-06
03_05_0044 + 20203644-20204054,20204695-20204916,20205092-202051... 45 4e-05
02_02_0474 + 10738476-10738797,10739568-10739677,10739891-107400... 34 0.099
11_01_0513 - 3977031-3977328,3977425-3977469,3977553-3977629,397... 28 6.5
11_02_0010 + 7322826-7323658,7324236-7324714,7325204-7326195 27 8.6
01_06_0734 + 31569017-31569358,31569832-31569906,31570009-315701... 27 8.6
>02_04_0017 + 18937774-18937864,18938505-18940945
Length = 843
Score = 124 bits (299), Expect = 5e-29
Identities = 57/108 (52%), Positives = 74/108 (68%)
Frame = -1
Query: 538 KMLVCMSANCQPRLMEPVYLCEIQCPEVAVGGIXGVLNRRRGHVFEESQVAGTPMFIVKA 359
+++ +PRL+EPVYL EIQ PE A+GGI GVLN++RGHVFEE Q GTP++ +KA
Sbjct: 712 RVIYASQLTAKPRLLEPVYLVEIQAPENALGGIYGVLNQKRGHVFEEMQRPGTPLYNIKA 771
Query: 358 XLPXNESFGFTADLRSNTGGQAFPQCVFDHXQVXPETRANLRASPTTL 215
LP ESFGF++ LR+ T GQAFPQCVFDH + + +TL
Sbjct: 772 YLPVIESFGFSSQLRAATSGQAFPQCVFDHWDMMTSDPLEAGSQASTL 819
Score = 47.2 bits (107), Expect = 1e-05
Identities = 20/27 (74%), Positives = 22/27 (81%)
Frame = -2
Query: 582 DAIHRGGGQIIPTXRRCLYACLLTASP 502
DAIHRGGGQ+IPT RR +YA LTA P
Sbjct: 697 DAIHRGGGQVIPTARRVIYASQLTAKP 723
Score = 29.5 bits (63), Expect = 2.1
Identities = 13/24 (54%), Positives = 16/24 (66%)
Frame = -3
Query: 251 DPCEPQSKPXNVXQETRKRKGLKE 180
DP E S+ + Q+ RKRKGLKE
Sbjct: 808 DPLEAGSQASTLVQDIRKRKGLKE 831
>04_01_0103 + 1082077-1082167,1083037-1085477
Length = 843
Score = 124 bits (298), Expect = 7e-29
Identities = 55/90 (61%), Positives = 69/90 (76%)
Frame = -1
Query: 538 KMLVCMSANCQPRLMEPVYLCEIQCPEVAVGGIXGVLNRRRGHVFEESQVAGTPMFIVKA 359
+++ +PRL+EPVYL EIQ PE A+GGI GVLN++RGHVFEE Q GTP++ +KA
Sbjct: 712 RVIYASQLTAKPRLLEPVYLVEIQAPENALGGIYGVLNQKRGHVFEEMQRPGTPLYNIKA 771
Query: 358 XLPXNESFGFTADLRSNTGGQAFPQCVFDH 269
LP ESFGF++ LR+ T GQAFPQCVFDH
Sbjct: 772 YLPVIESFGFSSQLRAATSGQAFPQCVFDH 801
Score = 47.2 bits (107), Expect = 1e-05
Identities = 20/27 (74%), Positives = 22/27 (81%)
Frame = -2
Query: 582 DAIHRGGGQIIPTXRRCLYACLLTASP 502
DAIHRGGGQ+IPT RR +YA LTA P
Sbjct: 697 DAIHRGGGQVIPTARRVIYASQLTAKP 723
>01_06_0662 + 30987187-30987277,30987825-30990214
Length = 826
Score = 116 bits (279), Expect = 1e-26
Identities = 53/93 (56%), Positives = 68/93 (73%)
Frame = -1
Query: 538 KMLVCMSANCQPRLMEPVYLCEIQCPEVAVGGIXGVLNRRRGHVFEESQVAGTPMFIVKA 359
+++ +PRL+EPVYL EIQ PE A+GGI VLN++RGHVFEE Q GTP++ +KA
Sbjct: 710 RVIYAAQLTAKPRLLEPVYLVEIQAPENALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKA 769
Query: 358 XLPXNESFGFTADLRSNTGGQAFPQCVFDHXQV 260
LP ESFGFT+ LR+ T GQAFP VFDH ++
Sbjct: 770 YLPVIESFGFTSTLRAATSGQAFPLFVFDHWEM 802
Score = 48.0 bits (109), Expect = 6e-06
Identities = 21/27 (77%), Positives = 22/27 (81%)
Frame = -2
Query: 582 DAIHRGGGQIIPTXRRCLYACLLTASP 502
DAIHRGGGQIIPT RR +YA LTA P
Sbjct: 695 DAIHRGGGQIIPTARRVIYAAQLTAKP 721
>01_06_0548 - 30137139-30139196,30139279-30139691,30139822-30139912
Length = 853
Score = 98.3 bits (234), Expect = 4e-21
Identities = 44/81 (54%), Positives = 56/81 (69%)
Frame = -1
Query: 505 PRLMEPVYLCEIQCPEVAVGGIXGVLNRRRGHVFEESQVAGTPMFIVKAXLPXNESFGFT 326
PRLMEP+Y +IQ P+ AVG + GVLN R G + EES+ GTP+ ++ LP +SF FT
Sbjct: 733 PRLMEPMYQVDIQVPKTAVGNVYGVLNSRNGELVEESERTGTPLSNLRFYLPVAKSFDFT 792
Query: 325 ADLRSNTGGQAFPQCVFDHXQ 263
LR+ T GQAFPQC+F H Q
Sbjct: 793 EKLRAETSGQAFPQCIFHHWQ 813
Score = 48.0 bits (109), Expect = 6e-06
Identities = 20/27 (74%), Positives = 23/27 (85%)
Frame = -2
Query: 582 DAIHRGGGQIIPTXRRCLYACLLTASP 502
D+IHRGGGQ+IPT RR +YA LTASP
Sbjct: 707 DSIHRGGGQLIPTARRAMYAAQLTASP 733
>06_03_0715 - 23823427-23823525,23823616-23823822,23823907-23824017,
23824124-23824322,23824410-23824495,23824940-23825098,
23825204-23825302,23825385-23826578,23826666-23826734,
23828042-23828812
Length = 997
Score = 96.3 bits (229), Expect = 2e-20
Identities = 48/84 (57%), Positives = 55/84 (65%)
Frame = -1
Query: 505 PRLMEPVYLCEIQCPEVAVGGIXGVLNRRRGHVFEESQVAGTPMFIVKAXLPXNESFGFT 326
PRLMEPVY EIQ P V I VL+RRRGHV + GTP+++VKA LP ESFGF
Sbjct: 849 PRLMEPVYYIEIQTPIDCVSAIYTVLSRRRGHVTADVPKPGTPIYVVKAFLPVIESFGFE 908
Query: 325 ADLRSNTGGQAFPQCVFDHXQVXP 254
DLR +T GQAF VFDH + P
Sbjct: 909 TDLRYHTQGQAFCLSVFDHWAIVP 932
Score = 40.7 bits (91), Expect = 9e-04
Identities = 16/27 (59%), Positives = 21/27 (77%)
Frame = -2
Query: 582 DAIHRGGGQIIPTXRRCLYACLLTASP 502
+ +HRGGGQIIPT RR +Y+ L A+P
Sbjct: 823 EPLHRGGGQIIPTARRVVYSAFLMANP 849
>03_05_0511 + 25056018-25059107
Length = 1029
Score = 74.1 bits (174), Expect = 8e-14
Identities = 36/86 (41%), Positives = 48/86 (55%)
Frame = -1
Query: 508 QPRLMEPVYLCEIQCPEVAVGGIXGVLNRRRGHVFEESQVAGTPMFIVKAXLPXNESFGF 329
+PRL+E +Y CE+ P +G VL+R+R V +E GT +F V A LP ES GF
Sbjct: 885 KPRLVEAMYFCELTTPTEQLGATYAVLSRKRARVLKEEMQEGTSLFTVHAYLPVAESVGF 944
Query: 328 TADLRSNTGGQAFPQCVFDHXQVXPE 251
+ +LRS T G A V H + PE
Sbjct: 945 SNELRSVTAGAASALLVLSHWEAIPE 970
>02_04_0148 - 20198407-20201424
Length = 1005
Score = 64.9 bits (151), Expect = 5e-11
Identities = 32/86 (37%), Positives = 44/86 (51%)
Frame = -1
Query: 508 QPRLMEPVYLCEIQCPEVAVGGIXGVLNRRRGHVFEESQVAGTPMFIVKAXLPXNESFGF 329
+PRL+EP+Y CE+ P +G + VL R V +E GT +F V A L ES F
Sbjct: 861 KPRLVEPMYFCELTTPTEQLGSMYAVLGNCRARVLKEEMQEGTSLFTVHAYLSVAESSEF 920
Query: 328 TADLRSNTGGQAFPQCVFDHXQVXPE 251
+ LR+ T G A F H + P+
Sbjct: 921 SKKLRNATAGAASALLAFSHWETVPQ 946
>04_04_0640 -
26891552-26891725,26891814-26892326,26892698-26893644,
26893778-26894114,26894413-26894462,26895020-26895248
Length = 749
Score = 48.4 bits (110), Expect = 4e-06
Identities = 27/71 (38%), Positives = 38/71 (53%)
Frame = -1
Query: 505 PRLMEPVYLCEIQCPEVAVGGIXGVLNRRRGHVFEESQVAGTPMFIVKAXLPXNESFGFT 326
PRL+EP+ E+ PE +G + G LN RRG V G + +V A +P E F +
Sbjct: 649 PRLLEPIMKVEVITPEEHLGDVIGDLNSRRGQVNSFGDKPG-GLKVVDAFVPLAEMFQYV 707
Query: 325 ADLRSNTGGQA 293
+ LR T G+A
Sbjct: 708 STLRGMTKGRA 718
>03_05_0044 +
20203644-20204054,20204695-20204916,20205092-20205130,
20206275-20206396,20206489-20206639,20207892-20207963,
20208256-20208351,20208861-20208949,20209068-20209134,
20210197-20210235,20210369-20210429,20210572-20210681,
20210766-20210840,20210914-20210982,20213126-20213247,
20214682-20214807,20214897-20215017,20215133-20215233,
20215564-20215624,20216560-20216613,20217585-20217689
Length = 770
Score = 45.2 bits (102), Expect = 4e-05
Identities = 27/95 (28%), Positives = 45/95 (47%), Gaps = 1/95 (1%)
Frame = -1
Query: 517 ANCQPRLMEPVYLCEIQCPEVAVGGIXGVLNRRRGHVFEESQVAGTPMFIVKAXLPXNES 338
A +P ++EPV E++ P G + G +N+R+G + Q +V +P N
Sbjct: 667 AAARPVILEPVMKVELKVPTEFQGTVTGDMNKRKGIIVGNDQEGDDT--VVVCHVPLNNM 724
Query: 337 FGFTADLRSNTGGQA-FPQCVFDHXQVXPETRANL 236
FG++ LRS T G+ F +H V + + L
Sbjct: 725 FGYSTALRSMTQGKGEFSMEYLEHNTVSQDVQMQL 759
>02_02_0474 +
10738476-10738797,10739568-10739677,10739891-10740094,
10740400-10740576,10740659-10740811,10741535-10741624,
10741939-10742049,10742169-10742285,10742881-10743032,
10743116-10743200,10743597-10743691,10744211-10744376,
10744459-10744654,10745662-10745795
Length = 703
Score = 33.9 bits (74), Expect = 0.099
Identities = 17/77 (22%), Positives = 34/77 (44%)
Frame = -1
Query: 502 RLMEPVYLCEIQCPEVAVGGIXGVLNRRRGHVFEESQVAGTPMFIVKAXLPXNESFGFTA 323
+L EP + ++ PE +G + +L +RRG + + ++K +P G
Sbjct: 501 KLQEPYEIAAVEVPEEYMGSVVELLGKRRGQMVDMQPSGPEGTTLLKYKIPTRGLIGLRN 560
Query: 322 DLRSNTGGQAFPQCVFD 272
+ + + G A +FD
Sbjct: 561 AVLTASRGTAILNTIFD 577
>11_01_0513 -
3977031-3977328,3977425-3977469,3977553-3977629,
3977734-3977850,3978012-3978188,3978282-3978379,
3978478-3978544,3978651-3978741,3978847-3978939,
3979049-3979380,3979938-3980189
Length = 548
Score = 27.9 bits (59), Expect = 6.5
Identities = 20/73 (27%), Positives = 34/73 (46%), Gaps = 3/73 (4%)
Frame = -2
Query: 312 PTPADRPSRSAYSTXGRSXRRPVRTSEQAXQRX-TGNEKEERIE--GRSPRLNSIFGQIV 142
P PA + ++A G+ + TS + + +GN E+ E +SP L ++ G I
Sbjct: 68 PPPASK--KTALLDKGKEKVSEMDTSVRRTSKGISGNPSEDSNEPVAKSPTLKTVIGSIR 125
Query: 141 NYIVKAN*KNVSI 103
NYI + + I
Sbjct: 126 NYIATKKGRKIKI 138
>11_02_0010 + 7322826-7323658,7324236-7324714,7325204-7326195
Length = 767
Score = 27.5 bits (58), Expect = 8.6
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = -2
Query: 174 PRLNSIFGQIVNYIVKAN*KNVSIRKALHACLFSTTHVPHHVKA 43
PR + +++NYIV + K+ + S +PHH+K+
Sbjct: 389 PRTREEWERVLNYIVSTSEKDNDLEVMNKILFMSYNDLPHHMKS 432
>01_06_0734 +
31569017-31569358,31569832-31569906,31570009-31570159,
31570716-31570784,31570864-31571036,31571474-31571611,
31571747-31571872,31571951-31572049,31573175-31573298,
31573465-31573528,31573798-31573852,31573951-31574075,
31574228-31574301,31574436-31574485,31574722-31574808,
31574897-31574947,31575025-31575108,31575400-31575498
Length = 661
Score = 27.5 bits (58), Expect = 8.6
Identities = 20/75 (26%), Positives = 28/75 (37%), Gaps = 1/75 (1%)
Frame = -1
Query: 496 MEPVYLCEIQCPEVAVGGIXGVLNRRRGHVFEESQVAGTP-MFIVKAXLPXNESFGFTAD 320
+EP+ ++ E VG + L R+G V + V GT + P GF
Sbjct: 463 LEPIEEVTVEVDEEHVGFVMETLTHRKGEVMDMGPVPGTTGRTRIFLTCPSRGLVGFKGI 522
Query: 319 LRSNTGGQAFPQCVF 275
S T G F F
Sbjct: 523 FSSFTRGTGFMHRAF 537
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,454,598
Number of Sequences: 37544
Number of extensions: 300922
Number of successful extensions: 703
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 685
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 702
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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