Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0518.Seq
(598 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0) 148 3e-36
SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.) 93 2e-19
SB_9825| Best HMM Match : EFG_C (HMM E-Value=1.3e-33) 93 2e-19
SB_12004| Best HMM Match : EFG_C (HMM E-Value=1.2e-15) 70 1e-12
SB_19451| Best HMM Match : EFG_C (HMM E-Value=1.8e-13) 33 0.18
SB_12373| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.71
SB_27582| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.6
SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.7
>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
Length = 833
Score = 148 bits (359), Expect = 3e-36
Identities = 73/104 (70%), Positives = 78/104 (75%)
Frame = -1
Query: 535 MLVCMSANCQPRLMEPVYLCEIQCPEVAVGGIXGVLNRRRGHVFEESQVAGTPMFIVKAX 356
+ CM +P L+EPVY EIQCPE AVGGI GVLNRRRG V EES VAGTPMFIVKA
Sbjct: 704 LYACM-LTAKPCLLEPVYSVEIQCPESAVGGIYGVLNRRRGQVLEESNVAGTPMFIVKAY 762
Query: 355 LPXNESFGFTADLRSNTGGQAFPQCVFDHXQVXPETRANLRASP 224
LP ESFGFTADLRS TGGQAFPQCVFDH QV P +L + P
Sbjct: 763 LPVMESFGFTADLRSKTGGQAFPQCVFDHWQVLPGDVHDLASMP 806
Score = 54.0 bits (124), Expect = 9e-08
Identities = 23/27 (85%), Positives = 24/27 (88%)
Frame = -2
Query: 582 DAIHRGGGQIIPTXRRCLYACLLTASP 502
DAIHRGGGQIIPT RR LYAC+LTA P
Sbjct: 687 DAIHRGGGQIIPTARRVLYACMLTAKP 713
Score = 37.5 bits (83), Expect = 0.008
Identities = 17/29 (58%), Positives = 19/29 (65%)
Frame = -3
Query: 257 PGDPCEPQSKPXNVXQETRKRKGLKEGLP 171
PGD + S P V TRKRKGLKEG+P
Sbjct: 796 PGDVHDLASMPGQVVANTRKRKGLKEGIP 824
>SB_40813| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 809
Score = 92.7 bits (220), Expect = 2e-19
Identities = 41/84 (48%), Positives = 56/84 (66%)
Frame = -1
Query: 505 PRLMEPVYLCEIQCPEVAVGGIXGVLNRRRGHVFEESQVAGTPMFIVKAXLPXNESFGFT 326
PRLMEP + E+Q P V + VL RRRGHV +++ V G+P++ +KA +P +SFGF
Sbjct: 693 PRLMEPYFFVEVQAPADCVSSVYTVLARRRGHVTQDAPVPGSPLYTIKAFIPAIDSFGFE 752
Query: 325 ADLRSNTGGQAFPQCVFDHXQVXP 254
DLR++T GQAF VF H Q+ P
Sbjct: 753 TDLRTHTQGQAFCLSVFHHWQIVP 776
Score = 44.4 bits (100), Expect = 7e-05
Identities = 20/37 (54%), Positives = 24/37 (64%)
Frame = -2
Query: 582 DAIHRGGGQIIPTXRRCLYACLLTASPVSWSLYIFVK 472
+ IHRGGGQIIPT RR Y+ L A+P Y FV+
Sbjct: 667 EPIHRGGGQIIPTARRVAYSAFLMATPRLMEPYFFVE 703
>SB_9825| Best HMM Match : EFG_C (HMM E-Value=1.3e-33)
Length = 119
Score = 92.7 bits (220), Expect = 2e-19
Identities = 41/84 (48%), Positives = 56/84 (66%)
Frame = -1
Query: 505 PRLMEPVYLCEIQCPEVAVGGIXGVLNRRRGHVFEESQVAGTPMFIVKAXLPXNESFGFT 326
PRLMEP + E+Q P V + VL RRRGHV +++ V G+P++ +KA +P +SFGF
Sbjct: 3 PRLMEPYFFVEVQAPADCVSSVYTVLARRRGHVTQDAPVPGSPLYTIKAFIPAIDSFGFE 62
Query: 325 ADLRSNTGGQAFPQCVFDHXQVXP 254
DLR++T GQAF VF H Q+ P
Sbjct: 63 TDLRTHTQGQAFCLSVFHHWQIVP 86
>SB_12004| Best HMM Match : EFG_C (HMM E-Value=1.2e-15)
Length = 549
Score = 70.1 bits (164), Expect = 1e-12
Identities = 35/83 (42%), Positives = 47/83 (56%), Gaps = 1/83 (1%)
Frame = -1
Query: 508 QP-RLMEPVYLCEIQCPEVAVGGIXGVLNRRRGHVFEESQVAGTPMFIVKAXLPXNESFG 332
QP RLM +Y C IQ +G + V+ RR G V E G+ +F V+A LP ESFG
Sbjct: 407 QPMRLMAAMYTCHIQATAEVLGRMYAVIARREGRVLSEEMKEGSDVFDVEAVLPVAESFG 466
Query: 331 FTADLRSNTGGQAFPQCVFDHXQ 263
F+ ++R T G A PQ +F H +
Sbjct: 467 FSEEIRKRTSGLANPQLMFSHWE 489
>SB_19451| Best HMM Match : EFG_C (HMM E-Value=1.8e-13)
Length = 238
Score = 33.1 bits (72), Expect = 0.18
Identities = 18/51 (35%), Positives = 26/51 (50%)
Frame = -1
Query: 448 GGIXGVLNRRRGHVFEESQVAGTPMFIVKAXLPXNESFGFTADLRSNTGGQ 296
G + +NRR G V G F + A +P N+ FG+ +LRS T G+
Sbjct: 155 GTVIAGVNRRHGQVTGTDANEG--YFTLFAEVPLNDMFGYATELRSQTQGK 203
>SB_12373| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 76
Score = 31.1 bits (67), Expect = 0.71
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +2
Query: 500 TGLAVSRHAYKHLLXVGMIWPPPLWMASSME 592
T +A+ +H HL + +WP WMA E
Sbjct: 10 TNIALRKHQCSHLFTIKRVWPVTRWMAIGTE 40
>SB_27582| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 158
Score = 27.9 bits (59), Expect = 6.6
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 4/52 (7%)
Frame = -2
Query: 315 VPTPADRPSRSAYSTXGRSXRRPVRTSEQ----AXQRXTGNEKEERIEGRSP 172
+P AD+ ++ S RS R+ + Q A +G K++RIEGR P
Sbjct: 54 LPANADKAAKDQQSNKLRSRRQRLMARLQRKLDAANLDSGRAKKQRIEGREP 105
>SB_6916| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2670
Score = 27.5 bits (58), Expect = 8.7
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = -3
Query: 305 RRTGLPAVRIRPXAGPPGDPCEPQS 231
R+T P+ P + PP PC P S
Sbjct: 922 RKTRTPSSHQSPQSAPPSSPCTPSS 946
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,598,319
Number of Sequences: 59808
Number of extensions: 340458
Number of successful extensions: 722
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1439498375
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -