Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0518.Seq
(598 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical pr... 164 5e-41
M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation fact... 164 5e-41
U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation fact... 84 6e-17
M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein. 84 6e-17
Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical pr... 55 3e-08
Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical pr... 36 0.017
Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical pr... 34 0.067
AF068713-7|AAC17798.2| 359|Caenorhabditis elegans Hypothetical ... 30 1.4
AC024791-2|AAK95891.1| 604|Caenorhabditis elegans Temporarily a... 28 4.4
>Z81068-5|CAB02985.1| 852|Caenorhabditis elegans Hypothetical
protein F25H5.4 protein.
Length = 852
Score = 164 bits (398), Expect = 5e-41
Identities = 74/85 (87%), Positives = 77/85 (90%)
Frame = -1
Query: 508 QPRLMEPVYLCEIQCPEVAVGGIXGVLNRRRGHVFEESQVAGTPMFIVKAXLPXNESFGF 329
+PRL+EPVYL EIQCPE AVGGI GVLNRRRGHVFEESQV GTPMF+VKA LP NESFGF
Sbjct: 731 EPRLLEPVYLVEIQCPEAAVGGIYGVLNRRRGHVFEESQVTGTPMFVVKAYLPVNESFGF 790
Query: 328 TADLRSNTGGQAFPQCVFDHXQVXP 254
TADLRSNTGGQAFPQCVFDH QV P
Sbjct: 791 TADLRSNTGGQAFPQCVFDHWQVLP 815
Score = 48.0 bits (109), Expect = 5e-06
Identities = 21/27 (77%), Positives = 22/27 (81%)
Frame = -2
Query: 582 DAIHRGGGQIIPTXRRCLYACLLTASP 502
DAIHRGGGQIIPT RR YA +LTA P
Sbjct: 706 DAIHRGGGQIIPTARRVFYASVLTAEP 732
Score = 44.4 bits (100), Expect = 6e-05
Identities = 18/29 (62%), Positives = 22/29 (75%)
Frame = -3
Query: 257 PGDPCEPQSKPXNVXQETRKRKGLKEGLP 171
PGDP E +KP + +TRKRKGLKEG+P
Sbjct: 815 PGDPLEAGTKPNQIVLDTRKRKGLKEGVP 843
>M86959-1|AAD03339.1| 852|Caenorhabditis elegans elongation factor
protein.
Length = 852
Score = 164 bits (398), Expect = 5e-41
Identities = 74/85 (87%), Positives = 77/85 (90%)
Frame = -1
Query: 508 QPRLMEPVYLCEIQCPEVAVGGIXGVLNRRRGHVFEESQVAGTPMFIVKAXLPXNESFGF 329
+PRL+EPVYL EIQCPE AVGGI GVLNRRRGHVFEESQV GTPMF+VKA LP NESFGF
Sbjct: 731 EPRLLEPVYLVEIQCPEAAVGGIYGVLNRRRGHVFEESQVTGTPMFVVKAYLPVNESFGF 790
Query: 328 TADLRSNTGGQAFPQCVFDHXQVXP 254
TADLRSNTGGQAFPQCVFDH QV P
Sbjct: 791 TADLRSNTGGQAFPQCVFDHWQVLP 815
Score = 48.0 bits (109), Expect = 5e-06
Identities = 21/27 (77%), Positives = 22/27 (81%)
Frame = -2
Query: 582 DAIHRGGGQIIPTXRRCLYACLLTASP 502
DAIHRGGGQIIPT RR YA +LTA P
Sbjct: 706 DAIHRGGGQIIPTARRVFYASVLTAEP 732
Score = 44.4 bits (100), Expect = 6e-05
Identities = 18/29 (62%), Positives = 22/29 (75%)
Frame = -3
Query: 257 PGDPCEPQSKPXNVXQETRKRKGLKEGLP 171
PGDP E +KP + +TRKRKGLKEG+P
Sbjct: 815 PGDPLEAGTKPNQIVLDTRKRKGLKEGVP 843
>U50193-2|AAA91248.1| 974|Caenorhabditis elegans Elongation factor
protein 1 protein.
Length = 974
Score = 84.2 bits (199), Expect = 6e-17
Identities = 38/84 (45%), Positives = 51/84 (60%)
Frame = -1
Query: 505 PRLMEPVYLCEIQCPEVAVGGIXGVLNRRRGHVFEESQVAGTPMFIVKAXLPXNESFGFT 326
PRLMEP Y E+ P V + VL +RRGHV ++ + G+PM+ + A +P +SFGF
Sbjct: 829 PRLMEPYYTVEVVAPADCVAAVYTVLAKRRGHVTTDAPMPGSPMYTISAYIPVMDSFGFE 888
Query: 325 ADLRSNTGGQAFPQCVFDHXQVXP 254
DLR +T GQAF F H Q+ P
Sbjct: 889 TDLRIHTQGQAFCMSAFHHWQLVP 912
Score = 40.3 bits (90), Expect = 0.001
Identities = 15/27 (55%), Positives = 21/27 (77%)
Frame = -2
Query: 582 DAIHRGGGQIIPTXRRCLYACLLTASP 502
+ ++RGGGQ+IPT RRC Y+ L A+P
Sbjct: 803 EPLYRGGGQMIPTARRCAYSAFLMATP 829
>M86958-1|AAA21824.1| 849|Caenorhabditis elegans eft-1 protein.
Length = 849
Score = 84.2 bits (199), Expect = 6e-17
Identities = 38/84 (45%), Positives = 51/84 (60%)
Frame = -1
Query: 505 PRLMEPVYLCEIQCPEVAVGGIXGVLNRRRGHVFEESQVAGTPMFIVKAXLPXNESFGFT 326
PRLMEP Y E+ P V + VL +RRGHV ++ + G+PM+ + A +P +SFGF
Sbjct: 704 PRLMEPYYTVEVVAPADCVAAVYTVLAKRRGHVTTDAPMPGSPMYTISAYIPVMDSFGFE 763
Query: 325 ADLRSNTGGQAFPQCVFDHXQVXP 254
DLR +T GQAF F H Q+ P
Sbjct: 764 TDLRIHTQGQAFCMSAFHHWQLVP 787
Score = 40.3 bits (90), Expect = 0.001
Identities = 15/27 (55%), Positives = 21/27 (77%)
Frame = -2
Query: 582 DAIHRGGGQIIPTXRRCLYACLLTASP 502
+ ++RGGGQ+IPT RRC Y+ L A+P
Sbjct: 678 EPLYRGGGQMIPTARRCAYSAFLMATP 704
>Z83235-8|CAB05774.2| 894|Caenorhabditis elegans Hypothetical protein
K10C3.5a protein.
Length = 894
Score = 55.2 bits (127), Expect = 3e-08
Identities = 30/84 (35%), Positives = 41/84 (48%)
Frame = -1
Query: 502 RLMEPVYLCEIQCPEVAVGGIXGVLNRRRGHVFEESQVAGTPMFIVKAXLPXNESFGFTA 323
RL+ +Y C + A+G + VL++R+ V E T +F V + +P ESF F
Sbjct: 753 RLVAAMYRCTVTTASQALGKVHAVLSQRKSKVLSEDINEATNLFEVVSLMPVVESFSFCD 812
Query: 322 DLRSNTGGQAFPQCVFDHXQVXPE 251
LR T G A Q F H QV E
Sbjct: 813 QLRKFTSGMASAQLQFSHWQVIDE 836
>Z83235-9|CAI79209.1| 705|Caenorhabditis elegans Hypothetical
protein K10C3.5b protein.
Length = 705
Score = 36.3 bits (80), Expect = 0.017
Identities = 21/53 (39%), Positives = 24/53 (45%)
Frame = -1
Query: 409 VFEESQVAGTPMFIVKAXLPXNESFGFTADLRSNTGGQAFPQCVFDHXQVXPE 251
V E T +F V + +P ESF F LR T G A Q F H QV E
Sbjct: 595 VLSEDINEATNLFEVVSLMPVVESFSFCDQLRKFTSGMASAQLQFSHWQVIDE 647
>Z81519-1|CAB04216.1| 750|Caenorhabditis elegans Hypothetical
protein F29C12.4 protein.
Length = 750
Score = 34.3 bits (75), Expect = 0.067
Identities = 20/68 (29%), Positives = 32/68 (47%)
Frame = -1
Query: 499 LMEPVYLCEIQCPEVAVGGIXGVLNRRRGHVFEESQVAGTPMFIVKAXLPXNESFGFTAD 320
L+EP+ E P G + L +R + G I +A P ++ FG+T++
Sbjct: 642 LLEPIMKVEATVPTEFQGNVVTSLTQRNALITTTDSTEGYATVICEA--PLSDMFGYTSE 699
Query: 319 LRSNTGGQ 296
LRS T G+
Sbjct: 700 LRSLTEGK 707
>AF068713-7|AAC17798.2| 359|Caenorhabditis elegans Hypothetical
protein T24A6.11 protein.
Length = 359
Score = 29.9 bits (64), Expect = 1.4
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +1
Query: 22 LLSHLRVCFNMMRNMCC*K*TCVKRFPYRYVFLICFNYVV 141
+L+ LR+C+ C + TC K FP ++V L+ ++VV
Sbjct: 290 ILTPLRICYTSCLFQHC-QITCQKNFPTKFVDLLSLSHVV 328
>AC024791-2|AAK95891.1| 604|Caenorhabditis elegans Temporarily
assigned gene nameprotein 63 protein.
Length = 604
Score = 28.3 bits (60), Expect = 4.4
Identities = 20/70 (28%), Positives = 31/70 (44%)
Frame = -1
Query: 427 NRRRGHVFEESQVAGTPMFIVKAXLPXNESFGFTADLRSNTGGQAFPQCVFDHXQVXPET 248
N RRG + S V+G P+ + P + S TA ++S F + + D+ PE
Sbjct: 202 NGRRGTIISSSHVSGIPL---RRRSPFSSSKS-TAPIKSRHYRSRFSESLEDNVFRSPER 257
Query: 247 RANLRASPTT 218
+ PTT
Sbjct: 258 HSRYEDRPTT 267
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,867,148
Number of Sequences: 27780
Number of extensions: 254784
Number of successful extensions: 564
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 563
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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