Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0518.Seq
         (598 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    24   1.3  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    22   5.3  

>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 4/38 (10%)
 Frame = +2

Query: 491 LHETGLAVSRHAYKHLLXVGMIWPPP----LWMASSME 592
           + E  LAVS    K++  + +I+PP     LW+  ++E
Sbjct: 446 IEEANLAVSAEREKNVSLLHLIFPPDIAKRLWLGETIE 483


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 7/23 (30%), Positives = 12/23 (52%)
 Frame = -1

Query: 526 CMSANCQPRLMEPVYLCEIQCPE 458
           C++   +P  M P Y C ++  E
Sbjct: 44  CLTVGMRPECMVPEYQCAVKRKE 66


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 153,802
Number of Sequences: 438
Number of extensions: 2994
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)