Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0517.Seq
         (449 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein S15a...    88   5e-19
SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein S...    88   5e-19
SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces pomb...    25   5.4  

>SPAC5D6.01 |rps2202|rps22-2, rps15a-2|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score = 88.2 bits (209), Expect = 5e-19
 Identities = 41/60 (68%), Positives = 47/60 (78%), Gaps = 1/60 (1%)
 Frame = +3

Query: 252 QCGVISPRFDVPINDIERWTN-LLPSRQFGYLVLTTXGGIMXHEEARXKHLGGKILGFFF 428
           +CGVISPRF+V + DIE+W N LLPSRQ G +VLTT  GIM H EAR K  GGKILGFF+
Sbjct: 71  KCGVISPRFNVKLKDIEKWVNQLLPSRQVGVIVLTTSRGIMSHNEARAKDAGGKILGFFY 130



 Score = 87.4 bits (207), Expect = 9e-19
 Identities = 41/59 (69%), Positives = 48/59 (81%)
 Frame = +1

Query: 43  MVRMNVLSDALKSIHNAEKRGKXQVLIRPCSKVIVKXLTVMMKHGYIGEFEIVDDHRAG 219
           MVR +VL+D L +I NAE+RG+ QVLIRP SKVIVK LTVM KHGYI EF  +DDHR+G
Sbjct: 1   MVRQSVLADCLNNIVNAERRGRRQVLIRPSSKVIVKFLTVMQKHGYIDEFTEIDDHRSG 59


>SPAC22A12.04c |rps2201|rps22-1, rps15a-1|40S ribosomal protein
           S15a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 130

 Score = 88.2 bits (209), Expect = 5e-19
 Identities = 41/60 (68%), Positives = 47/60 (78%), Gaps = 1/60 (1%)
 Frame = +3

Query: 252 QCGVISPRFDVPINDIERWTN-LLPSRQFGYLVLTTXGGIMXHEEARXKHLGGKILGFFF 428
           +CGVISPRF+V + DIE+W N LLPSRQ G +VLTT  GIM H EAR K  GGKILGFF+
Sbjct: 71  KCGVISPRFNVKLKDIEKWVNQLLPSRQVGVIVLTTSRGIMSHNEARAKDAGGKILGFFY 130



 Score = 87.4 bits (207), Expect = 9e-19
 Identities = 41/59 (69%), Positives = 48/59 (81%)
 Frame = +1

Query: 43  MVRMNVLSDALKSIHNAEKRGKXQVLIRPCSKVIVKXLTVMMKHGYIGEFEIVDDHRAG 219
           MVR +VL+D L +I NAE+RG+ QVLIRP SKVIVK LTVM KHGYI EF  +DDHR+G
Sbjct: 1   MVRQSVLADCLNNIVNAERRGRRQVLIRPSSKVIVKFLTVMQKHGYIDEFTEIDDHRSG 59


>SPBC16E9.10c |||AAA family ATPase Rix7 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 779

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = -1

Query: 176 PCFIITVXNLTMTLEQGLMRTCXFPRFSALCIDFKASLNTFIRTMAK 36
           P  +I   N   +L+  L R   F R   L +  + +    +RTMAK
Sbjct: 314 PVLVIGATNRPDSLDSALRRAGRFDREICLTVPSQDAREKILRTMAK 360


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,578,200
Number of Sequences: 5004
Number of extensions: 26498
Number of successful extensions: 46
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)