Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0517.Seq
         (449 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823           99   2e-21
02_03_0219 + 16541350-16541482,16541605-16541765,16541863-165419...    98   3e-21
02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289           63   9e-11

>07_01_0762 - 5852168-5852266,5852409-5852569,5852691-5852823
          Length = 130

 Score = 98.7 bits (235), Expect = 2e-21
 Identities = 45/59 (76%), Positives = 53/59 (89%)
 Frame = +1

Query: 43  MVRMNVLSDALKSIHNAEKRGKXQVLIRPCSKVIVKXLTVMMKHGYIGEFEIVDDHRAG 219
           MVR++VL+DALK+++NAEKRGK QVLIRP SKVI+K L VM KHGYIGEFE VDDHR+G
Sbjct: 1   MVRVSVLNDALKTMYNAEKRGKRQVLIRPSSKVIIKFLIVMQKHGYIGEFEFVDDHRSG 59



 Score = 97.1 bits (231), Expect = 6e-21
 Identities = 43/60 (71%), Positives = 51/60 (85%), Gaps = 1/60 (1%)
 Frame = +3

Query: 252 QCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTXGGIMXHEEARXKHLGGKILGFFF 428
           +CGVISPRFDV + +IE WT  LLPSRQFGY+VLTT  GIM HEEAR K++GGK+LGFF+
Sbjct: 71  KCGVISPRFDVGVKEIESWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130


>02_03_0219 +
           16541350-16541482,16541605-16541765,16541863-16541940,
           16543176-16543445
          Length = 213

 Score = 97.9 bits (233), Expect = 3e-21
 Identities = 44/59 (74%), Positives = 53/59 (89%)
 Frame = +1

Query: 43  MVRMNVLSDALKSIHNAEKRGKXQVLIRPCSKVIVKXLTVMMKHGYIGEFEIVDDHRAG 219
           MVR++VL+DALK+++NAEKRGK QV+IRP SKVI+K L VM KHGYIGEFE VDDHR+G
Sbjct: 1   MVRVSVLNDALKTMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEFVDDHRSG 59



 Score = 86.2 bits (204), Expect = 1e-17
 Identities = 40/56 (71%), Positives = 46/56 (82%), Gaps = 1/56 (1%)
 Frame = +3

Query: 252 QCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTXGGIMXHEEARXKHLGGKIL 416
           +CGVISPRFDV + +IE WT  LLPSRQFGY+VLTT  GIM HEEAR K++GGK L
Sbjct: 71  KCGVISPRFDVGVKEIESWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKEL 126


>02_02_0303 - 8766264-8766362,8767112-8767272,8768160-8768289
          Length = 129

 Score = 63.3 bits (147), Expect = 9e-11
 Identities = 26/64 (40%), Positives = 45/64 (70%), Gaps = 1/64 (1%)
 Frame = +3

Query: 237 HRXTKQCGVISPRFDVPINDIERW-TNLLPSRQFGYLVLTTXGGIMXHEEARXKHLGGKI 413
           H   K C  ++ R D+   +IE++   +LP+RQ+GY+V+TT  G++ HEEA  +++GG++
Sbjct: 65  HGRIKDCKALTYRQDIRAKEIEQYRVRMLPTRQWGYVVITTPNGVLDHEEAIKQNVGGQV 124

Query: 414 LGFF 425
           LG+F
Sbjct: 125 LGYF 128



 Score = 62.1 bits (144), Expect = 2e-10
 Identities = 26/54 (48%), Positives = 39/54 (72%)
 Frame = +1

Query: 58  VLSDALKSIHNAEKRGKXQVLIRPCSKVIVKXLTVMMKHGYIGEFEIVDDHRAG 219
           +L+DAL+++ NAE+RGK   L++P S V+V  L +M   GYI +FE++D HR G
Sbjct: 5   ILNDALRTMVNAERRGKATALLQPISGVMVSFLNIMKHRGYIKKFEVIDPHRVG 58


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,263,767
Number of Sequences: 37544
Number of extensions: 175318
Number of successful extensions: 231
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)