Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0517.Seq
         (449 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025460-6|AAB70989.1|  130|Caenorhabditis elegans Ribosomal pro...   107   3e-24
U41547-3|AAA83193.2|  145|Caenorhabditis elegans Hypothetical pr...    28   2.7  
Z81066-3|CAI46608.1|  363|Caenorhabditis elegans Hypothetical pr...    28   3.6  

>AF025460-6|AAB70989.1|  130|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 22 protein.
          Length = 130

 Score =  107 bits (258), Expect = 3e-24
 Identities = 51/59 (86%), Positives = 55/59 (93%)
 Frame = +1

Query: 43  MVRMNVLSDALKSIHNAEKRGKXQVLIRPCSKVIVKXLTVMMKHGYIGEFEIVDDHRAG 219
           MVRMNVL+DAL +I+NAEKRGK QVLIRP SKVIV+ LTVMMKHGYIGEFEIVDDHRAG
Sbjct: 1   MVRMNVLADALNAINNAEKRGKRQVLIRPASKVIVRFLTVMMKHGYIGEFEIVDDHRAG 59



 Score = 95.1 bits (226), Expect = 2e-20
 Identities = 43/60 (71%), Positives = 51/60 (85%), Gaps = 1/60 (1%)
 Frame = +3

Query: 252 QCGVISPRFDVPINDIERWTN-LLPSRQFGYLVLTTXGGIMXHEEARXKHLGGKILGFFF 428
           +  VISPR ++ +ND+E++TN LLPSRQFGYL+LTT  GIM HEEAR KHLGGKILGFFF
Sbjct: 71  KASVISPRLNIRLNDLEKYTNTLLPSRQFGYLILTTSAGIMDHEEARRKHLGGKILGFFF 130


>U41547-3|AAA83193.2|  145|Caenorhabditis elegans Hypothetical
           protein F22A3.2 protein.
          Length = 145

 Score = 28.3 bits (60), Expect = 2.7
 Identities = 14/48 (29%), Positives = 27/48 (56%)
 Frame = -3

Query: 255 IV*SACEIYNXLASSVIINDFKLSDVTVLHHHC*XLNDDFGTGPDEDL 112
           +V +A E ++   +  +   F+  +V V +     ++DDFG+ PD+DL
Sbjct: 15  VVLAASESHSGRQNYRVKGAFRCGNVPVKNVQVKLIDDDFGSDPDDDL 62


>Z81066-3|CAI46608.1|  363|Caenorhabditis elegans Hypothetical
           protein F17B5.6 protein.
          Length = 363

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 9/14 (64%), Positives = 10/14 (71%), Gaps = 1/14 (7%)
 Frame = +2

Query: 326 TTVWL-PSPYNXWW 364
           T +WL P PYN WW
Sbjct: 29  TVIWLIPRPYNYWW 42


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,704,115
Number of Sequences: 27780
Number of extensions: 147652
Number of successful extensions: 229
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)