Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= msgV0517.Seq
(449 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g59850.1 68418.m07505 40S ribosomal protein S15A (RPS15aF) cy... 99 2e-21
At1g07770.2 68414.m00839 40S ribosomal protein S15A (RPS15aA) id... 99 2e-21
At1g07770.1 68414.m00838 40S ribosomal protein S15A (RPS15aA) id... 99 2e-21
At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD) cy... 97 5e-21
At2g39590.1 68415.m04856 40S ribosomal protein S15A (RPS15aC) 94 5e-20
At4g29430.1 68417.m04202 40S ribosomal protein S15A (RPS15aE) ri... 64 4e-11
At2g19720.1 68415.m02304 40S ribosomal protein S15A (RPS15aB) 63 1e-10
At1g18390.1 68414.m02297 protein kinase family protein contains ... 27 4.4
>At5g59850.1 68418.m07505 40S ribosomal protein S15A (RPS15aF)
cytoplasmic ribosomal protein S15a, Arabidopsis
thaliana, EMBL:ATAF1412
Length = 130
Score = 98.7 bits (235), Expect = 2e-21
Identities = 45/59 (76%), Positives = 53/59 (89%)
Frame = +1
Query: 43 MVRMNVLSDALKSIHNAEKRGKXQVLIRPCSKVIVKXLTVMMKHGYIGEFEIVDDHRAG 219
MVR++VL+DALKS++NAEKRGK QV+IRP SKVI+K L VM KHGYIGEFE VDDHR+G
Sbjct: 1 MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSG 59
Score = 96.7 bits (230), Expect = 6e-21
Identities = 43/60 (71%), Positives = 51/60 (85%), Gaps = 1/60 (1%)
Frame = +3
Query: 252 QCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTXGGIMXHEEARXKHLGGKILGFFF 428
+CGVISPRFDV + +IE WT LLPSRQFGY+VLTT GIM HEEAR K++GGK+LGFF+
Sbjct: 71 KCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130
>At1g07770.2 68414.m00839 40S ribosomal protein S15A (RPS15aA)
identical to GB:AAA61608 from [Arabidopsis thaliana]
(Plant Physiol. 106 (1), 401-402 (1994))
Length = 130
Score = 98.7 bits (235), Expect = 2e-21
Identities = 45/59 (76%), Positives = 53/59 (89%)
Frame = +1
Query: 43 MVRMNVLSDALKSIHNAEKRGKXQVLIRPCSKVIVKXLTVMMKHGYIGEFEIVDDHRAG 219
MVR++VL+DALKS++NAEKRGK QV+IRP SKVI+K L VM KHGYIGEFE VDDHR+G
Sbjct: 1 MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSG 59
Score = 96.7 bits (230), Expect = 6e-21
Identities = 43/60 (71%), Positives = 51/60 (85%), Gaps = 1/60 (1%)
Frame = +3
Query: 252 QCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTXGGIMXHEEARXKHLGGKILGFFF 428
+CGVISPRFDV + +IE WT LLPSRQFGY+VLTT GIM HEEAR K++GGK+LGFF+
Sbjct: 71 KCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130
>At1g07770.1 68414.m00838 40S ribosomal protein S15A (RPS15aA)
identical to GB:AAA61608 from [Arabidopsis thaliana]
(Plant Physiol. 106 (1), 401-402 (1994))
Length = 130
Score = 98.7 bits (235), Expect = 2e-21
Identities = 45/59 (76%), Positives = 53/59 (89%)
Frame = +1
Query: 43 MVRMNVLSDALKSIHNAEKRGKXQVLIRPCSKVIVKXLTVMMKHGYIGEFEIVDDHRAG 219
MVR++VL+DALKS++NAEKRGK QV+IRP SKVI+K L VM KHGYIGEFE VDDHR+G
Sbjct: 1 MVRISVLNDALKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSG 59
Score = 96.7 bits (230), Expect = 6e-21
Identities = 43/60 (71%), Positives = 51/60 (85%), Gaps = 1/60 (1%)
Frame = +3
Query: 252 QCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTXGGIMXHEEARXKHLGGKILGFFF 428
+CGVISPRFDV + +IE WT LLPSRQFGY+VLTT GIM HEEAR K++GGK+LGFF+
Sbjct: 71 KCGVISPRFDVGVKEIEGWTARLLPSRQFGYIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130
>At3g46040.1 68416.m04981 40S ribosomal protein S15A (RPS15aD)
cytoplasmic ribosomal protein S15a, Arabidopsis
thaliana, EMBL:ATAF1412
Length = 130
Score = 97.1 bits (231), Expect = 5e-21
Identities = 44/59 (74%), Positives = 52/59 (88%)
Frame = +1
Query: 43 MVRMNVLSDALKSIHNAEKRGKXQVLIRPCSKVIVKXLTVMMKHGYIGEFEIVDDHRAG 219
MVR++VL+D LKS++NAEKRGK QV+IRP SKVI+K L VM KHGYIGEFE VDDHR+G
Sbjct: 1 MVRISVLNDGLKSMYNAEKRGKRQVMIRPSSKVIIKFLIVMQKHGYIGEFEYVDDHRSG 59
Score = 95.1 bits (226), Expect = 2e-20
Identities = 42/60 (70%), Positives = 51/60 (85%), Gaps = 1/60 (1%)
Frame = +3
Query: 252 QCGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTXGGIMXHEEARXKHLGGKILGFFF 428
+CGVISPRFDV + +IE WT LLPSRQFG++VLTT GIM HEEAR K++GGK+LGFF+
Sbjct: 71 KCGVISPRFDVGVKEIEGWTARLLPSRQFGFIVLTTSAGIMDHEEARRKNVGGKVLGFFY 130
>At2g39590.1 68415.m04856 40S ribosomal protein S15A (RPS15aC)
Length = 136
Score = 93.9 bits (223), Expect = 5e-20
Identities = 41/59 (69%), Positives = 50/59 (84%), Gaps = 1/59 (1%)
Frame = +3
Query: 255 CGVISPRFDVPINDIERWT-NLLPSRQFGYLVLTTXGGIMXHEEARXKHLGGKILGFFF 428
CGVISPR+D+ + +IE WT LLPSRQFGY+VLTT GIM HEEAR K++GGK+LGFF+
Sbjct: 78 CGVISPRYDLGVKEIEGWTAKLLPSRQFGYIVLTTSAGIMDHEEARKKNVGGKVLGFFY 136
Score = 93.5 bits (222), Expect = 6e-20
Identities = 43/59 (72%), Positives = 50/59 (84%)
Frame = +1
Query: 43 MVRMNVLSDALKSIHNAEKRGKXQVLIRPCSKVIVKXLTVMMKHGYIGEFEIVDDHRAG 219
MVR +VL+D LKS+ NAEK+GK QV+IRP SKVI+K LTVM KHGYI EFE VDDHR+G
Sbjct: 7 MVRASVLNDCLKSMSNAEKQGKRQVMIRPSSKVIIKFLTVMQKHGYIAEFEYVDDHRSG 65
>At4g29430.1 68417.m04202 40S ribosomal protein S15A (RPS15aE)
ribosomal protein S15a - Brassica napus,PIR2:S20945
Length = 129
Score = 64.1 bits (149), Expect = 4e-11
Identities = 28/59 (47%), Positives = 44/59 (74%), Gaps = 1/59 (1%)
Frame = +3
Query: 255 CGVISPRFDVPINDIERWTN-LLPSRQFGYLVLTTXGGIMXHEEARXKHLGGKILGFFF 428
C ++ R DV +IE++T LP+RQ+GY+V+TT GI+ HEEA +++GG++LGFF+
Sbjct: 71 CKALTYRQDVRAKEIEKYTERTLPTRQWGYVVITTPDGILDHEEAIKRNVGGQVLGFFY 129
Score = 57.6 bits (133), Expect = 4e-09
Identities = 25/54 (46%), Positives = 37/54 (68%)
Frame = +1
Query: 58 VLSDALKSIHNAEKRGKXQVLIRPCSKVIVKXLTVMMKHGYIGEFEIVDDHRAG 219
+L+DAL++I NAE+RGK V ++P S V+ L +M + GYI F++ D HR G
Sbjct: 5 ILNDALRTIVNAERRGKASVELKPISTVMSSFLRIMKEKGYIKNFQVYDPHRVG 58
>At2g19720.1 68415.m02304 40S ribosomal protein S15A (RPS15aB)
Length = 129
Score = 62.9 bits (146), Expect = 1e-10
Identities = 28/58 (48%), Positives = 43/58 (74%), Gaps = 1/58 (1%)
Frame = +3
Query: 255 CGVISPRFDVPINDIERWTN-LLPSRQFGYLVLTTXGGIMXHEEARXKHLGGKILGFF 425
C ++ R DV N+I ++T LP+RQ+GY+V+TT GI+ HEEA +++GG++LGFF
Sbjct: 71 CKALTYRQDVKANEIGQYTERTLPTRQWGYIVITTPDGILDHEEAIKRNVGGQVLGFF 128
Score = 58.0 bits (134), Expect = 3e-09
Identities = 26/54 (48%), Positives = 37/54 (68%)
Frame = +1
Query: 58 VLSDALKSIHNAEKRGKXQVLIRPCSKVIVKXLTVMMKHGYIGEFEIVDDHRAG 219
+L+DAL++I NAEKRGK V ++P S V+ L +M + GYI F++ D HR G
Sbjct: 5 ILNDALRTIVNAEKRGKASVELKPVSTVMSSFLKIMKEKGYIKNFQVHDPHRVG 58
>At1g18390.1 68414.m02297 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 605
Score = 27.5 bits (58), Expect = 4.4
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +1
Query: 121 IRPCSKVIVKXLTVMMKHGYIGEFEIVDDHRAG 219
+RPC + LT + +G+ E ++VD +++G
Sbjct: 556 LRPCMSHVQDTLTRIQNNGFGSEMDVVDVNKSG 588
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,317,193
Number of Sequences: 28952
Number of extensions: 142548
Number of successful extensions: 209
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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