Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0515.Seq
         (449 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0996 - 23197758-23198705                                         29   1.3  
07_01_0310 + 2209084-2209554                                           29   1.7  
09_01_0113 + 1751204-1751507,1751791-1752039,1753136-1753398,175...    27   9.2  
07_01_0389 - 2915191-2915604,2915696-2915752,2915867-2915922,291...    27   9.2  

>07_03_0996 - 23197758-23198705
          Length = 315

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +1

Query: 292 PAVPVXLDSNSNXAGSXXSGGXSTYGXSSXSXDGSVXSXG 411
           P +    +SNS+ AGS   GG S+   S+ S DG+V   G
Sbjct: 161 PTITTTSNSNSDGAGS-ACGGSSSSSSSTDSCDGAVKQGG 199


>07_01_0310 + 2209084-2209554
          Length = 156

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 25/74 (33%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
 Frame = +2

Query: 32  APGIVVDAYHPPAVPAQLMQAQTA*DLVHPAVAALMDTVPTVVMEVYHP-PAVPVTLIQT 208
           A  ++ DA  PPAVPA  +    A   +  A    +  VPTV      P PAVP   +  
Sbjct: 13  AARLLADAT-PPAVPAVTLPPMPAIPAIPAATLPPIPAVPTVPNAALPPMPAVPKVALPP 71

Query: 209 QTARDPVHPVVAAL 250
             A  P  P V A+
Sbjct: 72  MPA-VPAVPTVPAV 84


>09_01_0113 +
           1751204-1751507,1751791-1752039,1753136-1753398,
           1755192-1755357,1755445-1755534,1756376-1756674,
           1757022-1757231
          Length = 526

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 14/42 (33%), Positives = 18/42 (42%)
 Frame = -2

Query: 304 LEQPVDDTLPSRLLELYHKCCYHRMXWIPRCLSLNQCYWNCR 179
           LE PVDD +  RLL L  +C        P    + +  W  R
Sbjct: 475 LEDPVDDEVLERLLNLAFQCAAPTREDRPTMKEVGEQLWEIR 516


>07_01_0389 -
           2915191-2915604,2915696-2915752,2915867-2915922,
           2916053-2916113,2916243-2916365,2916505-2916537,
           2916617-2916709,2916839-2916934,2917025-2917203,
           2917344-2917530,2918051-2918184,2918311-2918518,
           2918598-2918633,2918785-2919241,2919633-2919736,
           2920489-2920569,2920646-2920697,2920837-2920876,
           2920991-2921085,2921241-2921383,2921899-2922006,
           2922120-2922221,2922302-2922348,2922425-2922554,
           2923173-2923304,2923404-2923616,2923709-2923963,
           2924053-2924799
          Length = 1460

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 1/74 (1%)
 Frame = +2

Query: 8   AVAALTDIAPGIVVDAYHPPAVPAQLMQAQTA*DLVHPAVAALMDTVPTVVMEVYHPPA- 184
           A A L +    ++V  + PPA+P+ L  A      +  A AAL D +   +      PA 
Sbjct: 46  AAALLAEAGCTLLVPLHQPPALPSPLSFAPRLARALAAADAALRDRLLAGLAAFAESPAR 105

Query: 185 VPVTLIQTQTARDP 226
           +   L+ T  A  P
Sbjct: 106 LRQLLLPTSAAHSP 119


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.317    0.131    0.381 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,701,804
Number of Sequences: 37544
Number of extensions: 165390
Number of successful extensions: 394
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 358
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 394
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)