Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0515.Seq
         (449 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49209| Best HMM Match : Vicilin_N (HMM E-Value=0.23)                34   0.062
SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)                     31   0.58 
SB_42244| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.77 
SB_30469| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.77 
SB_32428| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.1  
SB_13781| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.1  
SB_45986| Best HMM Match : Extensin_2 (HMM E-Value=0.12)               27   5.4  
SB_30503| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.4  
SB_55764| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   7.2  
SB_21618| Best HMM Match : Yip1 (HMM E-Value=1.1)                      27   9.5  

>SB_49209| Best HMM Match : Vicilin_N (HMM E-Value=0.23)
          Length = 197

 Score = 33.9 bits (74), Expect = 0.062
 Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
 Frame = -2

Query: 244 CYHRMXW-IPRCLSLNQCYWNCRWMIHFHHDCWNCIHKCCYRRMY*ILRCLSLHQLXWNC 68
           C     W + R   ++ C   CRW +    D   C   C +R    I R   +H+    C
Sbjct: 128 CKSTCRWRLDRQADIHTCKSTCRWRLDRQADIHTCKSTCRWR----INRQADIHRCKSTC 183

Query: 67  RWMIRVHHDAWSYI 26
           RW +    D  +Y+
Sbjct: 184 RWQLDRQADIHTYM 197



 Score = 30.7 bits (66), Expect = 0.58
 Identities = 19/80 (23%), Positives = 29/80 (36%), Gaps = 1/80 (1%)
 Frame = -2

Query: 244 CYHRMXW-IPRCLSLNQCYWNCRWMIHFHHDCWNCIHKCCYRRMY*ILRCLSLHQLXWNC 68
           C     W + R   ++ C   CRW +    D   C   C +R    + R   +H     C
Sbjct: 77  CKSTCPWRLDRQADIHTCKSTCRWRLDRQADIHTCKSTCRWR----LDRQADIHTCKSTC 132

Query: 67  RWMIRVHHDAWSYIRKCCYR 8
           RW +    D  +    C +R
Sbjct: 133 RWRLDRQADIHTCKSTCRWR 152



 Score = 30.7 bits (66), Expect = 0.58
 Identities = 19/80 (23%), Positives = 29/80 (36%), Gaps = 1/80 (1%)
 Frame = -2

Query: 244 CYHRMXW-IPRCLSLNQCYWNCRWMIHFHHDCWNCIHKCCYRRMY*ILRCLSLHQLXWNC 68
           C     W + R   ++ C   CRW +    D   C   C +R    + R   +H     C
Sbjct: 94  CKSTCRWRLDRQADIHTCKSTCRWRLDRQADIHTCKSTCRWR----LDRQADIHTCKSTC 149

Query: 67  RWMIRVHHDAWSYIRKCCYR 8
           RW +    D  +    C +R
Sbjct: 150 RWRLDRQADIHTCKSTCRWR 169



 Score = 30.7 bits (66), Expect = 0.58
 Identities = 18/69 (26%), Positives = 25/69 (36%), Gaps = 1/69 (1%)
 Frame = -2

Query: 244 CYHRMXW-IPRCLSLNQCYWNCRWMIHFHHDCWNCIHKCCYRRMY*ILRCLSLHQLXWNC 68
           C     W + R   ++ C   CRW +    D   C   C +R    + R   +H     C
Sbjct: 111 CKSTCRWRLDRQADIHTCKSTCRWRLDRQADIHTCKSTCRWR----LDRQADIHTCKSTC 166

Query: 67  RWMIRVHHD 41
           RW I    D
Sbjct: 167 RWRINRQAD 175


>SB_3575| Best HMM Match : DUF943 (HMM E-Value=4.5)
          Length = 612

 Score = 30.7 bits (66), Expect = 0.58
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = -2

Query: 274 SRLLELYHKCCYHRMXWIPRCLSLNQCYWNCRWMIHFHHDCWNCIHKCCYRRMY 113
           +R    +H CCY    +   C   +  Y  C +  H+H+ C+   +  CYR  Y
Sbjct: 14  NRCYRHHHYCCYCHHRY---CYYRHHHY--CWYRHHYHYPCYRHYYHRCYRHHY 62


>SB_42244| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 870

 Score = 30.3 bits (65), Expect = 0.77
 Identities = 21/77 (27%), Positives = 26/77 (33%), Gaps = 1/77 (1%)
 Frame = +2

Query: 20  LTDIAPGIVVDAYHPPAVPAQLMQAQTA*DLVHPAVAALMDTVPTVVMEVYHPPAVPVTL 199
           + D+ P +V D       P        A    HP   A     P+ V    H PA P  L
Sbjct: 243 IRDVRPSLVTDLARHAGSPHVSATPTAAGVSAHPIPVATSKVPPSGVSSAPHKPAQPGLL 302

Query: 200 IQTQTARDPVH-PVVAA 247
                   P+H P  AA
Sbjct: 303 AHFSQTHSPLHMPTSAA 319


>SB_30469| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 645

 Score = 30.3 bits (65), Expect = 0.77
 Identities = 17/80 (21%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
 Frame = +2

Query: 5   PAVAALTDIAPGIVVDAYHPPAVPAQLMQAQTA*DLVH--PAVAALMDTVPTVVMEVYHP 178
           P++       P I       P++   + Q ++   LV   P++  L+  VP++   V H 
Sbjct: 280 PSIKTSVTQVPSIKTSVTQVPSIKTSVTQFRSIKTLVTQVPSIKTLVTQVPSIKTSVTHV 339

Query: 179 PAVPVTLIQTQTARDPVHPV 238
           P++  ++ Q  + +  V  V
Sbjct: 340 PSIKTSVTQVPSGKTSVTQV 359


>SB_32428| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1128

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -2

Query: 232 MXWIPRCLSLNQCYWNCRWMIHFHHDCWNCIHKCC 128
           M +   C   N C +NC    H+ +   +C HKCC
Sbjct: 311 MQYYRGCAFANHCDFNC---THYINGSSDCNHKCC 342


>SB_13781| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 314

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 18/47 (38%), Positives = 23/47 (48%)
 Frame = +2

Query: 38  GIVVDAYHPPAVPAQLMQAQTA*DLVHPAVAALMDTVPTVVMEVYHP 178
           G+  D  HPP +PA L   +    L+  AVA+L     TV ME   P
Sbjct: 166 GLSSDDLHPPYIPASLDLKRI---LIKFAVASLAQYFTTVAMETCTP 209


>SB_45986| Best HMM Match : Extensin_2 (HMM E-Value=0.12)
          Length = 1243

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 8/58 (13%)
 Frame = -2

Query: 253 HKCCYHRMXWIP---RCLSLNQC---YWNCR-WMIHFHHDCWN-CIHKCCYRRMY*IL 104
           HKCCY R+  IP   +C    +C   ++N R +    +H  +N   HKCC+ ++  IL
Sbjct: 180 HKCCYGRI--IPKYLKCEMFLRCGKNFYNLRDYRYCGNHYIFNRRFHKCCHNQVIPIL 235


>SB_30503| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1402

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 20/58 (34%), Positives = 31/58 (53%), Gaps = 8/58 (13%)
 Frame = -2

Query: 253 HKCCYHRMXWIP---RCLSLNQC---YWNCR-WMIHFHHDCWN-CIHKCCYRRMY*IL 104
           HKCCY R+  IP   +C    +C   ++N R +    +H  +N   HKCC+ ++  IL
Sbjct: 180 HKCCYGRI--IPKYLKCEMFLRCGKNFYNLRDYRYCGNHYIFNRRFHKCCHNQVIPIL 235


>SB_55764| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 186

 Score = 27.1 bits (57), Expect = 7.2
 Identities = 27/94 (28%), Positives = 39/94 (41%), Gaps = 4/94 (4%)
 Frame = -2

Query: 271 RLLELYHKCCYHRMXWIPRCLSLNQCYWNCRWMIHFHHDCWNCIHKCCYRRMY*ILRCLS 92
           R + + H CCY R+  + R L     Y      +      W  +H CCY R+  + R L 
Sbjct: 51  RYIRVVHACCYIRV--VTRVLLYQGGY------MRVAISGW--LHACCYIRV--VTRVL- 97

Query: 91  LHQLXWN----CRWMIRVHHDAWSYIRKCCYRRM 2
           L+Q  +       W  RV    W  +  CCY R+
Sbjct: 98  LYQGGYTRVAISGWFTRVAISRW--LHACCYIRV 129


>SB_21618| Best HMM Match : Yip1 (HMM E-Value=1.1)
          Length = 338

 Score = 26.6 bits (56), Expect = 9.5
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +2

Query: 149 PTVVMEVYHPPAVPVTLIQTQTARDPVH 232
           P V  E++HPP V V     Q    PVH
Sbjct: 5   PIVAPEIHHPPQVVVHTPYEQQQLTPVH 32


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.317    0.131    0.381 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,477,873
Number of Sequences: 59808
Number of extensions: 186058
Number of successful extensions: 375
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 326
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 370
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 896151577
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)