Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0515.Seq
         (449 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U64840-6|AAB04964.1|  574|Caenorhabditis elegans Hypothetical pr...    29   2.1  
U53141-5|AAA96107.1|  574|Caenorhabditis elegans Hypothetical pr...    29   2.1  
U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical pr...    28   3.6  
AL032626-23|CAE17974.1|   88|Caenorhabditis elegans Hypothetical...    27   6.3  

>U64840-6|AAB04964.1|  574|Caenorhabditis elegans Hypothetical
           protein ZC317.7 protein.
          Length = 574

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +2

Query: 113 VHPAVAALMDTVPTVVMEVYHP-PAVPVTLIQTQTARDPV 229
           +HP +AA+  T    +M V HP P +P+    +Q+++ P+
Sbjct: 204 MHPQMAAMAATFNPGLMVVSHPVPVIPIPSNSSQSSQPPM 243


>U53141-5|AAA96107.1|  574|Caenorhabditis elegans Hypothetical
           protein C14C11.2 protein.
          Length = 574

 Score = 28.7 bits (61), Expect = 2.1
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +2

Query: 113 VHPAVAALMDTVPTVVMEVYHP-PAVPVTLIQTQTARDPV 229
           +HP +AA+  T    +M V HP P +P+    +Q+++ P+
Sbjct: 204 MHPQMAAMAATFNPGLMVVSHPVPVIPIPSNSSQSSQPPM 243


>U21310-3|AAA62522.2| 1288|Caenorhabditis elegans Hypothetical protein
            F40H6.5 protein.
          Length = 1288

 Score = 27.9 bits (59), Expect = 3.6
 Identities = 13/40 (32%), Positives = 17/40 (42%)
 Frame = +2

Query: 107  DLVHPAVAALMDTVPTVVMEVYHPPAVPVTLIQTQTARDP 226
            +L+   +A    T+ TV M    PP  P T   T T   P
Sbjct: 1129 NLIGSMIAYRESTIDTVSMACVRPPTTPTTTTSTTTTTTP 1168


>AL032626-23|CAE17974.1|   88|Caenorhabditis elegans Hypothetical
           protein Y37D8A.26 protein.
          Length = 88

 Score = 27.1 bits (57), Expect = 6.3
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -2

Query: 196 CYWNCRWMIHFHHDCWNC 143
           C+W CR  +  HH C NC
Sbjct: 62  CFW-CRCFMDVHHRCPNC 78


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.317    0.131    0.381 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,642,205
Number of Sequences: 27780
Number of extensions: 129599
Number of successful extensions: 401
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 401
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)