Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0515.Seq
         (449 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g17780.1 68418.m02085 hydrolase, alpha/beta fold family prote...    29   1.9  
At3g45810.1 68416.m04958 ferric reductase-like transmembrane com...    28   2.5  
At1g69280.1 68414.m07943 expressed protein                             27   4.4  
At4g39955.1 68417.m05659 hydrolase, alpha/beta fold family prote...    27   5.9  
At5g14920.1 68418.m01750 gibberellin-regulated family protein si...    27   7.7  
At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP1...    27   7.7  

>At5g17780.1 68418.m02085 hydrolase, alpha/beta fold family protein
           low similarity to SP|Q02104 Lipase 1 precursor (EC
           3.1.1.3) (Triacylglycerol lipase) {Psychrobacter
           immobilis}, SP|P27747|ACOC_ALCEU Dihydrolipoamide
           acetyltransferase component of acetoin cleaving system
           (EC 2.3.1.12) [Ralstonia eutropha] {Alcaligenes
           eutrophus}; contains Pfam profile PF00561: hydrolase,
           alpha/beta fold family
          Length = 417

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 4/40 (10%)
 Frame = -2

Query: 244 CYHRMXW---IPRCLSLNQCYWNCRWMI-HFHHDCWNCIH 137
           C H   W   I  C+   + +W  + +  H HH  W+ +H
Sbjct: 296 CKHHKIWEWLIKLCIGKREIHWKIKDITRHTHHSAWHSMH 335


>At3g45810.1 68416.m04958 ferric reductase-like transmembrane
           component family protein similar to respiratory burst
           oxidase protein D RbohD from Arabidopsis thaliana,
           EMBL:AF055357 [gi:3242789], similar to respiratory burst
           oxidase protein D RbohD from Arabidopsis thaliana,
           EMBL:AF055357 [gi:3242789], respiratory burst oxidase
           homolog from Solanum tuberosum [GI:16549089]; contains
           Pfam profile PF01794 Ferric reductase like transmembrane
           component
          Length = 912

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 14/40 (35%), Positives = 16/40 (40%)
 Frame = +1

Query: 292 PAVPVXLDSNSNXAGSXXSGGXSTYGXSSXSXDGSVXSXG 411
           P +P          G    GG S YG SS +  GSV   G
Sbjct: 727 PGIPKTGQKYEGSVGGESLGGSSVYGGSSVNGGGSVNGGG 766


>At1g69280.1 68414.m07943 expressed protein
          Length = 400

 Score = 27.5 bits (58), Expect = 4.4
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 5/48 (10%)
 Frame = -2

Query: 256 YHKCCYHRMXWIPRCLSLNQ---CYWN--CRWMIHFHHDCWNCIHKCC 128
           Y+  C  R+   P C S  +   C +N  C W+   H  CW+C   CC
Sbjct: 322 YNFFCCKRLKCCP-CFSWCRWPSCDYNSSCGWLFCCHWSCWSCC--CC 366


>At4g39955.1 68417.m05659 hydrolase, alpha/beta fold family protein
           low similarity to SP|P24640|LIP3_MORSP Lipase 3
           precursor (EC 3.1.1.3) (Triacylglycerol lipase)
           {Moraxella sp}; contains Pfam profile PF00561:
           hydrolase, alpha/beta fold family
          Length = 328

 Score = 27.1 bits (57), Expect = 5.9
 Identities = 12/48 (25%), Positives = 20/48 (41%)
 Frame = -2

Query: 277 PSRLLELYHKCCYHRMXWIPRCLSLNQCYWNCRWMIHFHHDCWNCIHK 134
           PS L  L     Y    WIP C +++  +  C+  +    +    +HK
Sbjct: 180 PSMLRRLLQLSFYKPPIWIPSCFAMDYIHVMCKDYLQERKELVEALHK 227


>At5g14920.1 68418.m01750 gibberellin-regulated family protein
           similar to SP|P46689 Gibberellin-regulated protein 1
           precursor {Arabidopsis thaliana}; contains Pfam profile
           PF02704: Gibberellin regulated protein
          Length = 275

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +2

Query: 170 YHPPAVPVTLIQTQTARDPVHP 235
           Y PP +P T I+  T + PV P
Sbjct: 59  YKPPTLPTTPIKPPTTKPPVKP 80


>At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP19)
           non-consensus splice site at the intron:exon boundary
           (AT:exon)
          Length = 247

 Score = 26.6 bits (56), Expect = 7.7
 Identities = 16/45 (35%), Positives = 19/45 (42%)
 Frame = +2

Query: 119 PAVAALMDTVPTVVMEVYHPPAVPVTLIQTQTARDPVHPVVAALM 253
           P  AA   T  T  +    PPA PVT     T   P  P VA ++
Sbjct: 47  PTTAAPPPTTTTPPVSAAQPPASPVTPPPAVTPTSPPAPKVAPVI 91


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.317    0.131    0.381 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,191,883
Number of Sequences: 28952
Number of extensions: 117462
Number of successful extensions: 252
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 251
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 732537840
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)