Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0512.Seq
         (489 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory recept...    27   0.091
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    21   4.5  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   6.0  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   6.0  

>AM292381-1|CAL23193.2|  364|Tribolium castaneum gustatory receptor
           candidate 60 protein.
          Length = 364

 Score = 27.1 bits (57), Expect = 0.091
 Identities = 12/45 (26%), Positives = 22/45 (48%)
 Frame = -3

Query: 256 CTHLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEV 122
           CT L +    +      IK+  E+ E RD+++     L +D +E+
Sbjct: 157 CTKLCKEANKTAFLWYHIKIDREDEEARDDFIKLGIKLSNDKLEI 201


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 9/40 (22%), Positives = 22/40 (55%)
 Frame = -3

Query: 208 SIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKML 89
           ++K +E++ ++  +     +    D+I+V+P+  D  K L
Sbjct: 265 AVKRKEKKAQKEKDKPNSTTNGSPDVIKVEPELSDSEKTL 304


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -3

Query: 265  CWICTHLMRRLRHSQVRGISIKLQEEERE 179
            C ICT+      + Q+R I   L++  R+
Sbjct: 1087 CMICTYKADNKENEQLRKIQESLRDLNRK 1115


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 21.0 bits (42), Expect = 6.0
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = -3

Query: 265  CWICTHLMRRLRHSQVRGISIKLQEEERE 179
            C ICT+      + Q+R I   L++  R+
Sbjct: 1087 CMICTYKADNKENEQLRKIQESLRDLNRK 1115


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 97,203
Number of Sequences: 336
Number of extensions: 1795
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 53
effective length of database: 104,777
effective search space used: 11420693
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)