Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0512.Seq
         (489 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54293| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_18679| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.7  
SB_25588| Best HMM Match : PAE (HMM E-Value=1.5e-31)                   28   3.6  
SB_6699| Best HMM Match : No HMM Matches (HMM E-Value=.)               27   8.3  

>SB_54293| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 116

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = +2

Query: 398 VRTRPMAEVVQRCF*XRPRIRYQAYRFRRP 487
           +RTR     V      RPR  YQAYR+RRP
Sbjct: 75  IRTRDYLYGVLNKIVRRPRRDYQAYRYRRP 104


>SB_18679| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 156

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -2

Query: 485 VDGIDKLDIEFAAAVKSSAXQLQPWVV 405
           VDGIDKLDIEF     S++ +  P  V
Sbjct: 25  VDGIDKLDIEFLQPGGSTSSRAAPTAV 51


>SB_25588| Best HMM Match : PAE (HMM E-Value=1.5e-31)
          Length = 996

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = +2

Query: 74  NIVEVQHLQHILGVGVYFDDVMFESRHF--WDIVVTP 178
           N+   ++ +H++  G    D M E++HF  W++V  P
Sbjct: 361 NLGSSRNYKHLMDAGGILSDKMHENKHFHSWNVVYVP 397


>SB_6699| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1087

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 13/48 (27%), Positives = 26/48 (54%)
 Frame = -3

Query: 247 LMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKD 104
           L +R RHS+    S     + RE+  +++ ++  LE++    D DT++
Sbjct: 54  LEKRYRHSRKGTESHNTGTDTREKVLSHITQIQTLENESHNTDTDTRE 101


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,669,676
Number of Sequences: 59808
Number of extensions: 225995
Number of successful extensions: 870
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 825
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)