Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0512.Seq
         (489 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M22142-1|AAA28869.1|  131|Drosophila melanogaster protein ( D.me...   126   1e-29
BT001651-1|AAN71406.1|  131|Drosophila melanogaster RE44119p pro...   126   1e-29
AJ271817-3|CAB72251.1|  131|Drosophila melanogaster ribosomal pr...   126   1e-29
AE014296-1654|AAF50272.1|  131|Drosophila melanogaster CG3922-PB...   126   1e-29

>M22142-1|AAA28869.1|  131|Drosophila melanogaster protein (
           D.melanogaster ribosomalprotein S17 gene, complete cds.
           ).
          Length = 131

 Score =  126 bits (305), Expect = 1e-29
 Identities = 61/70 (87%), Positives = 64/70 (91%)
 Frame = -3

Query: 253 THLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNI 74
           THLM RLRHSQVRGISIKLQEEERERRDNYVP VSALE DIIEVD DTK+MLK+LDF+NI
Sbjct: 55  THLMGRLRHSQVRGISIKLQEEERERRDNYVPAVSALEQDIIEVDADTKEMLKLLDFHNI 114

Query: 73  NGLQLTQPAT 44
            GLQLTQP T
Sbjct: 115 RGLQLTQPNT 124



 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 34/53 (64%), Positives = 36/53 (67%)
 Frame = -1

Query: 414 MGRVRXXXXXXXXXXXXXXXXTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGF 256
           MGRVR                TRLTLDF TNKRICEE+AIIPTKPLRNKIAG+
Sbjct: 1   MGRVRTKTVKKAAKVIIEKYYTRLTLDFHTNKRICEEVAIIPTKPLRNKIAGY 53


>BT001651-1|AAN71406.1|  131|Drosophila melanogaster RE44119p
           protein.
          Length = 131

 Score =  126 bits (305), Expect = 1e-29
 Identities = 61/70 (87%), Positives = 64/70 (91%)
 Frame = -3

Query: 253 THLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNI 74
           THLM RLRHSQVRGISIKLQEEERERRDNYVP VSALE DIIEVD DTK+MLK+LDF+NI
Sbjct: 55  THLMGRLRHSQVRGISIKLQEEERERRDNYVPAVSALEQDIIEVDADTKEMLKLLDFHNI 114

Query: 73  NGLQLTQPAT 44
            GLQLTQP T
Sbjct: 115 RGLQLTQPNT 124



 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 34/53 (64%), Positives = 36/53 (67%)
 Frame = -1

Query: 414 MGRVRXXXXXXXXXXXXXXXXTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGF 256
           MGRVR                TRLTLDF TNKRICEE+AIIPTKPLRNKIAG+
Sbjct: 1   MGRVRTKTVKKAAKVIIEKYYTRLTLDFHTNKRICEEVAIIPTKPLRNKIAGY 53


>AJ271817-3|CAB72251.1|  131|Drosophila melanogaster ribosomal
           protein S17 protein.
          Length = 131

 Score =  126 bits (305), Expect = 1e-29
 Identities = 61/70 (87%), Positives = 64/70 (91%)
 Frame = -3

Query: 253 THLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNI 74
           THLM RLRHSQVRGISIKLQEEERERRDNYVP VSALE DIIEVD DTK+MLK+LDF+NI
Sbjct: 55  THLMGRLRHSQVRGISIKLQEEERERRDNYVPAVSALEQDIIEVDADTKEMLKLLDFHNI 114

Query: 73  NGLQLTQPAT 44
            GLQLTQP T
Sbjct: 115 RGLQLTQPNT 124



 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 34/53 (64%), Positives = 36/53 (67%)
 Frame = -1

Query: 414 MGRVRXXXXXXXXXXXXXXXXTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGF 256
           MGRVR                TRLTLDF TNKRICEE+AIIPTKPLRNKIAG+
Sbjct: 1   MGRVRTKTVKKAAKVIIEKYYTRLTLDFHTNKRICEEVAIIPTKPLRNKIAGY 53


>AE014296-1654|AAF50272.1|  131|Drosophila melanogaster CG3922-PB
           protein.
          Length = 131

 Score =  126 bits (305), Expect = 1e-29
 Identities = 61/70 (87%), Positives = 64/70 (91%)
 Frame = -3

Query: 253 THLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHDIIEVDPDTKDMLKMLDFNNI 74
           THLM RLRHSQVRGISIKLQEEERERRDNYVP VSALE DIIEVD DTK+MLK+LDF+NI
Sbjct: 55  THLMGRLRHSQVRGISIKLQEEERERRDNYVPAVSALEQDIIEVDADTKEMLKLLDFHNI 114

Query: 73  NGLQLTQPAT 44
            GLQLTQP T
Sbjct: 115 RGLQLTQPNT 124



 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 34/53 (64%), Positives = 36/53 (67%)
 Frame = -1

Query: 414 MGRVRXXXXXXXXXXXXXXXXTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGF 256
           MGRVR                TRLTLDF TNKRICEE+AIIPTKPLRNKIAG+
Sbjct: 1   MGRVRTKTVKKAAKVIIEKYYTRLTLDFHTNKRICEEVAIIPTKPLRNKIAGY 53


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,431,650
Number of Sequences: 53049
Number of extensions: 338869
Number of successful extensions: 930
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 913
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 927
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1726192251
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)