Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= msgV0512.Seq
         (489 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000263-14|AAG00017.2|  130|Caenorhabditis elegans Ribosomal pr...    79   2e-15
AC006605-8|AAK85439.2|  741|Caenorhabditis elegans Ligase protei...    30   0.78 
AF106577-10|AAC78189.1|  796|Caenorhabditis elegans Hypothetical...    28   3.2  
AC006648-9|AAF39858.2|  306|Caenorhabditis elegans Btb and math ...    28   3.2  
U53337-5|AAP40522.1|  377|Caenorhabditis elegans Hypothetical pr...    28   4.2  
U53337-4|AAA96186.2|  636|Caenorhabditis elegans Hypothetical pr...    28   4.2  
Z81139-7|CAI46624.1|  358|Caenorhabditis elegans Hypothetical pr...    27   7.3  
Z35637-3|CAA84689.1|  244|Caenorhabditis elegans Hypothetical pr...    27   9.7  

>AF000263-14|AAG00017.2|  130|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 17 protein.
          Length = 130

 Score = 79.0 bits (186), Expect = 2e-15
 Identities = 39/61 (63%), Positives = 45/61 (73%), Gaps = 3/61 (4%)
 Frame = -3

Query: 253 THLMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALEHD---IIEVDPDTKDMLKMLDF 83
           THLMRR+    VRGISIKLQEEERERRDNY+PE+S ++      I+VD DT DMLK   F
Sbjct: 55  THLMRRIERGPVRGISIKLQEEERERRDNYMPEISTVDPSQLTSIKVDTDTSDMLKAAGF 114

Query: 82  N 80
           N
Sbjct: 115 N 115



 Score = 52.4 bits (120), Expect = 2e-07
 Identities = 26/53 (49%), Positives = 32/53 (60%)
 Frame = -1

Query: 414 MGRVRXXXXXXXXXXXXXXXXTRLTLDFDTNKRICEEIAIIPTKPLRNKIAGF 256
           M RVR                TR+T DF  NKR+C+E+AII +KPLRNKIAG+
Sbjct: 1   MSRVRTKTVKKASRVLIEKYYTRMTNDFHNNKRVCDEVAIIGSKPLRNKIAGY 53


>AC006605-8|AAK85439.2|  741|Caenorhabditis elegans Ligase protein 4
           protein.
          Length = 741

 Score = 30.3 bits (65), Expect = 0.78
 Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
 Frame = -1

Query: 240 GVSDT--RKCEESLSNFRKRSVRGVTTMSQKCL 148
           G S+T  RKCEE L +F    V+G+T  ++ C+
Sbjct: 652 GTSETIRRKCEEILKHFDATVVKGITPSTKLCI 684


>AF106577-10|AAC78189.1|  796|Caenorhabditis elegans Hypothetical
           protein F46F5.11 protein.
          Length = 796

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 15/57 (26%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
 Frame = -3

Query: 217 RGISIKLQEEERERRDN----YVPEVSALEHDIIEVDPDTKDMLKMLDFNNINGLQL 59
           RG  ++  E+ + R D+    Y  + +A++  ++  DPD   + ++L  ++ NGL L
Sbjct: 187 RGFPLEHIEKHKNRNDSQVLCYEMKRAAVQQGLVHHDPDVDAIYRLLHADSKNGLNL 243


>AC006648-9|AAF39858.2|  306|Caenorhabditis elegans Btb and math
           domain containingprotein 3 protein.
          Length = 306

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -1

Query: 228 TRKCEESLSNFRKRSVRGVTTMSQKCLLSNMTSS 127
           TRKCEE L +F ++ ++    +++K  L N+  S
Sbjct: 235 TRKCEEFLIDFSEKPIKEKLKVAKKYQLENLKKS 268


>U53337-5|AAP40522.1|  377|Caenorhabditis elegans Hypothetical
           protein R02E12.2b protein.
          Length = 377

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = -2

Query: 332 LIQIKEYVKKSLSFLPSLLGIKLLDLHTFNEASQTLASARNL 207
           L+  K YV +  S    LLG  LLD H FN  ++ +++  NL
Sbjct: 230 LLNSKNYVTRRQSL--KLLGELLLDRHNFNTMTKYISNPDNL 269


>U53337-4|AAA96186.2|  636|Caenorhabditis elegans Hypothetical
           protein R02E12.2a protein.
          Length = 636

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 16/42 (38%), Positives = 23/42 (54%)
 Frame = -2

Query: 332 LIQIKEYVKKSLSFLPSLLGIKLLDLHTFNEASQTLASARNL 207
           L+  K YV +  S    LLG  LLD H FN  ++ +++  NL
Sbjct: 489 LLNSKNYVTRRQSL--KLLGELLLDRHNFNTMTKYISNPDNL 528


>Z81139-7|CAI46624.1|  358|Caenorhabditis elegans Hypothetical
           protein W05H5.5 protein.
          Length = 358

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = -3

Query: 112 TKDMLKMLDFNNINGLQL 59
           T D+ KML+ NN+NGL+L
Sbjct: 107 TDDIGKMLNVNNLNGLEL 124


>Z35637-3|CAA84689.1|  244|Caenorhabditis elegans Hypothetical
           protein C03C10.4 protein.
          Length = 244

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 14/36 (38%), Positives = 24/36 (66%)
 Frame = -3

Query: 247 LMRRLRHSQVRGISIKLQEEERERRDNYVPEVSALE 140
           ++ R  +SQ+  +SI L+ E +ER+D+Y   + ALE
Sbjct: 183 VLTRTMNSQLELMSI-LEHEVQERKDSYSDSMRALE 217


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,416,751
Number of Sequences: 27780
Number of extensions: 173754
Number of successful extensions: 490
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 490
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)